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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.444473 (12 seq.)
>C007956
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063620
2063546
-
Thr
GGT
[Ensembl]
¡û
>WENV180233505
OBCP01000719
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
262
188
-
Thr
GGT
[ENA]
¢þ
>WENV180569938
OCLR01000947
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
262
188
-
Thr
GGT
[ENA]
¢þ
>WENV180570880
OCLS01000941
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
262
188
-
Thr
GGT
[ENA]
¢þ
>WENV180571856
OCLT01000678
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
262
188
-
Thr
GGT
[ENA]
¢þ
>WENV180640145
OCRL01000672
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
262
188
-
Thr
GGT
[ENA]
¢þ
>WENV180641119
OCRM01000728
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
262
188
-
Thr
GGT
[ENA]
¢þ
>W141561464
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
155605
155679
+
Thr
GGT
[ENA]
¡û
>C09103916
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
720120
720046
-
Thr
GGT
[Ensembl]
¡û
>C10105358
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063620
2063546
-
Thr
GGT
[Ensembl]
¡û
>C11107285
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063620
2063546
-
Thr
GGT
[Ensembl]
¡û
>C161082960
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
662061
662135
+
Thr
GGT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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