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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.444586 (40 seq.)
>W1710872782
LMMG01000021
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
225028
225102
+
Glu
TTC
[ENA]
¡û
>W1710873187
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
226236
226310
+
Glu
TTC
[ENA]
¡û
>W1710874367
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
32520
32594
+
Glu
TTC
[ENA]
¡û
>W1710874424
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
208687
208761
+
Glu
TTC
[ENA]
¡û
>W1710874472
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
9736
9810
+
Glu
TTC
[ENA]
¡û
>W1710874562
LMNS01000009
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
102965
102891
-
Glu
TTC
[ENA]
¡û
>W1710878285
LMQV01000004
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
121329
121255
-
Glu
TTC
[ENA]
¡û
>W1711073790
LSIX01001025
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
2678
2752
+
Glu
TTC
[ENA]
¡û
>W1711078698
LSNC01000062
Alphaproteobacteria
Methylorubrum populi [LSNC]
48476
48550
+
Glu
TTC
[ENA]
¡û
>W131222222
AUBC01000001
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
189776
189702
-
Glu
TTC
[ENA]
¡û
>W131051714
AMXU01000003
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
228805
228731
-
Glu
TTC
[ENA]
¡û
>C171092174
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
1419883
1419809
-
Glu
TTC
-
¡û
>C171115184
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
1758649
1758723
+
Glu
TTC
-
¡û
>C08006477
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
198806
198880
+
Glu
TTC
[Ensembl]
¡û
>W141277762
JAEV01000005
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
1092890
1092964
+
Glu
TTC
[ENA]
¡û
>C08006626
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
217545
217619
+
Glu
TTC
[Ensembl]
¡û
>C181000338
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
126185
126259
+
Glu
TTC
-
¡û
>C181175626
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
109489
109563
+
Glu
TTC
-
¡û
>C181227883
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
142741
142667
-
Glu
TTC
-
¡û
>W09106853
ABEC01000005
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
108094
108168
+
Glu
TTC
[ENA]
¡û
>C09107408
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
121619
121693
+
Glu
TTC
[Ensembl]
¡û
>C09107492
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
61827
61901
+
Glu
TTC
[Ensembl]
¡û
>C09107595
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
61782
61856
+
Glu
TTC
[Ensembl]
¡û
>W1810658552
QJJJ01000013
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
25194
25120
-
Glu
TTC
[ENA]
¡û
>SRA1015391
SRR023846.40264
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Glu
TTC
[SRA]
>SRA1015580
SRR023846.117646
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Glu
TTC
[SRA]
>SRA1015955
SRR023846.282969
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Glu
TTC
[SRA]
>SRA1016115
SRR023846.353221
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
148
+
Glu
TTC
[SRA]
>C161004954
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
50897
50971
+
Glu
TTC
[Ensembl]
¡û
>W1610043193
BAZP01001979
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
482
408
-
Glu
TTC
[ENA]
¡û
>W1610735128
LMMG01000021
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
225028
225102
+
Glu
TTC
[ENA]
¡û
>W1610735533
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
226236
226310
+
Glu
TTC
[ENA]
¡û
>W1610736713
LMNN01000025
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
32520
32594
+
Glu
TTC
[ENA]
¡û
>W1610736770
LMNP01000007
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
208687
208761
+
Glu
TTC
[ENA]
¡û
>W1610736818
LMNQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
9736
9810
+
Glu
TTC
[ENA]
¡û
>W1610736908
LMNS01000009
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
102965
102891
-
Glu
TTC
[ENA]
¡û
>W1610740631
LMQV01000004
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
121329
121255
-
Glu
TTC
[ENA]
¡û
>W1610913095
LSIX01001025
Alphaproteobacteria
Methylobacterium sp. CCH5-D2 [LSIX]
2678
2752
+
Glu
TTC
[ENA]
¡û
>W1610917608
LSNC01000062
Alphaproteobacteria
Methylorubrum populi [LSNC]
48476
48550
+
Glu
TTC
[ENA]
¡û
>W1710040353
BAZP01001979
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
482
408
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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