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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44626 (69 seq.)
>W1710909038
LNQD01000009
Bacillota
Lacticaseibacillus paracasei casei [LNQD]
65952
65865
-
Leu
TAA
[ENA]
¡û
>W131063763
ANLF01000465
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp70 [ANLF]
99
12
-
Leu
TAA
[ENA]
¡û
>W131064882
ANML01000123
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp223 [ANML]
229
142
-
Leu
TAA
[ENA]
¡û
>W1711113110
LTXZ01000153
Bacillota
Lactobacillus sp. HMSC061B07 [LTXZ]
145
58
-
Leu
TAA
[ENA]
¡û
>W1711585779
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
939334
939247
-
Leu
TAA
[ENA]
¡û
>W1711686802
MSBH01000004
Bacillota
Lentilactobacillus parabuchneri [MSBH]
115408
115321
-
Leu
TAA
[ENA]
¡û
>C171037661
CP015338
Bacillota
Levilactobacillus brevis 100D8 [CP015338]
204805
204718
-
Leu
TAA
-
¡û
>WENV180708044
ODFJ01000207
[ODFJ] human metagenome; G_DNA_Tongue dorsum
418
505
+
Leu
TAA
[ENA]
¢þ
>WENV180779954
ODIN01027923
[ODIN] human metagenome; G_DNA_Throat
257
170
-
Leu
TAA
[ENA]
¢þ
>WENV180795200
ODIZ01053220
[ODIZ] human metagenome; G_DNA_Tongue dorsum
257
170
-
Leu
TAA
[ENA]
¢þ
>WENV180835640
ODKE01007013
[ODKE] human metagenome; G_DNA_Supragingival plaque
58
145
+
Leu
TAA
[ENA]
¢þ
>WENV180844348
ODKN01084242
[ODKN] human metagenome; G_DNA_Supragingival plaque
166
253
+
Leu
TAA
[ENA]
¢þ
>WENV180878247
ODLV01029113
[ODLV] human metagenome; G_DNA_Tongue dorsum
603
516
-
Leu
TAA
[ENA]
¢þ
>WENV181001710
ODVW01006189
[ODVW] human metagenome; G_DNA_Buccal mucosa
749
662
-
Leu
TAA
[ENA]
¢þ
>WENV181161017
OEIK01090148
[OEIK] human metagenome; G_DNA_Supragingival plaque
257
170
-
Leu
TAA
[ENA]
¢þ
>WENV182491412
OISK01001323
[OISK] human gut metagenome; human gut
3490
3404
-
Leu
TAA
[ENA]
¢þ
>WENV182831608
OKEG01000029
[OKEG] human gut metagenome; human gut
64
151
+
Leu
TAA
[ENA]
¢þ
>WENV182832042
OKEJ01000088
[OKEJ] human gut metagenome; human gut
64
151
+
Leu
TAA
[ENA]
¢þ
>WENV182861356
OKPE01000372
[OKPE] human gut metagenome; human gut
313
400
+
Leu
TAA
[ENA]
¢þ
>WENV182951480
OKVU01000768
[OKVU] human gut metagenome; human gut
4271
4357
+
Leu
TAA
[ENA]
¢þ
>C181052550
CP021456
Bacillota
Levilactobacillus brevis ZLB004 [CP021456]
1837076
1836989
-
Leu
TAA
-
¡û
>C181054753
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
596410
596498
+
Leu
TAA
-
¡û
>C191019477
CP022109
Bacillota
Lacticaseibacillus rhamnosus ATCC 11443 [CP022109]
2562030
2561943
-
Leu
TAA
-
¡û
>C191035328
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
622233
622320
+
Leu
TAA
-
¡û
>C191135567
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
616718
616805
+
Leu
TAA
-
¡û
>C191207115
LR134331
Bacillota
Lacticaseibacillus rhamnosus NCTC13764 [LR134331]
2560195
2560108
-
Leu
TAA
-
¡û
>W09122516
ACGG01000097
Bacillota
Lentilactobacillus hilgardii subsp. gravesensis ATCC 27305 [ACGG]
353
440
+
Leu
TAA
[ENA]
¡û
>W141805348
JPKN01000235
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
80868
80780
-
Leu
TAA
[ENA]
¡û
>W141805360
JPKN01000241
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
2411
2324
-
Leu
TAA
[ENA]
¡û
>W1910177175
BJDO01000012
Bacillota
Secundilactobacillus hailunensis 887-11 [BJDO]
53403
53490
+
Leu
TAA
[ENA]
¡û
>W1910177206
BJDO01000100
Bacillota
Secundilactobacillus hailunensis 887-11 [BJDO]
505
590
+
Leu
TAA
[ENA]
¡û
>W1910181691
BJMF01000031
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
402
489
+
Leu
TAA
[ENA]
¡û
>W1910621596
LKFJ01000077
Bacillota
Lacticaseibacillus paracasei FAM18119 [LKFJ]
59895
59808
-
Leu
TAA
[ENA]
¡û
>W1910622134
LKFT01000073
Bacillota
Lacticaseibacillus paracasei FAM18168 [LKFT]
20643
20556
-
Leu
TAA
[ENA]
¡û
>W1910870924
NCWS01000084
Bacillota
Lentilactobacillus kefiri OG2 [NCWS]
426
513
+
Leu
TAA
[ENA]
¡û
>W1910922819
NIGJ01000014
Bacillota
Levilactobacillus brevis SF9B [NIGJ]
147143
147056
-
Leu
TAA
[ENA]
¡û
>W1911533707
OKQY01000092
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
484
572
+
Leu
TAA
[ENA]
¡û
>W1911587122
PJQS01000035
Bacillota
Lacticaseibacillus rhamnosus LR-B2 [PJQS]
270
357
+
Leu
TAA
[ENA]
¡û
>W1911587149
PJQT01000027
Bacillota
Lacticaseibacillus rhamnosus LR-CVC [PJQT]
43512
43425
-
Leu
TAA
[ENA]
¡û
>W1810473967
QAHV01000013
Bacillota
Lactobacillus sp. DS15_6 [QAHV]
88727
88640
-
Leu
TAA
[ENA]
¡û
>W1810474131
QAHY01000012
Bacillota
Lactobacillus sp. DS9_6 [QAHY]
88727
88640
-
Leu
TAA
[ENA]
¡û
>W1810531569
QCXQ01000001
Bacillota
Levilactobacillus bambusae BS-W1 [QCXQ]
381
468
+
Leu
TAA
[ENA]
¡û
>W1810531603
QCXQ01000002
Bacillota
Levilactobacillus bambusae BS-W1 [QCXQ]
120534
120447
-
Leu
TAA
[ENA]
¡û
>W1810706025
QMJT01000006
Bacillota
Levilactobacillus brevis KMB_620 [QMJT]
23947
24034
+
Leu
TAA
[ENA]
¡û
>W1810814657
QSAL01000016
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
466
554
+
Leu
TAA
[ENA]
¡û
>W1810830151
QSLO01000009
Bacillota
Fructilactobacillus fructivorans KCTC 3543 = DSM 20203 [QSLO]
473
560
+
Leu
TAA
[ENA]
¡û
>W1511438606
JUMO01000094
Bacillota
Lacticaseibacillus rhamnosus 944_LRHA [JUMO]
72
159
+
Leu
TAA
[ENA]
¡û
>W1511440971
JUPX01000133
Bacillota
Lacticaseibacillus rhamnosus 870_LRHA [JUPX]
69
156
+
Leu
TAA
[ENA]
¡û
>W1511444210
JUTS01000160
Bacillota
Lacticaseibacillus rhamnosus 769_LRHA [JUTS]
312
399
+
Leu
TAA
[ENA]
¡û
>W1511446162
JUWQ01000016
Bacillota
Lacticaseibacillus rhamnosus 699_LRHA [JUWQ]
63
150
+
Leu
TAA
[ENA]
¡û
>W1511449852
JVBN01000043
Bacillota
Granulicatella sp. 572.rep2_STHE 572.rep2_STHE [JVBN]
1255
1342
+
Leu
TAA
[ENA]
¡û
>W1511449859
JVBN01000046
Bacillota
Granulicatella sp. 572.rep2_STHE 572.rep2_STHE [JVBN]
43432
43345
-
Leu
TAA
[ENA]
¡û
>W1511507616
JXNV01000066
Bacillota
Lacticaseibacillus paracasei KL1-Liu [JXNV]
324
411
+
Leu
TAA
[ENA]
¡û
>W121045236
AICN01000078
Bacillota
Limosilactobacillus gastricus PS3 [AICN]
79525
79437
-
Leu
TAA
[ENA]
¡û
>W1610034891
AZEB01000086
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
221
308
+
Leu
TAA
[ENA]
¡û
>W1610035989
AZEY01000068
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
36240
36153
-
Leu
TAA
[ENA]
¡û
>W1610036194
AZFC01000035
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
166106
166019
-
Leu
TAA
[ENA]
¡û
>W1610036991
AZFS01000060
Bacillota
Levilactobacillus hammesii DSM 16381 [AZFS]
119280
119367
+
Leu
TAA
[ENA]
¡û
>W1610037369
AZFZ01000016
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
46619
46532
-
Leu
TAA
[ENA]
¡û
>W1610543264
JTHQ01000021
Bacillota
Lacticaseibacillus rhamnosus [JTHQ]
249
336
+
Leu
TAA
[ENA]
¡û
>W1610544917
JTIX01000141
Bacillota
Lacticaseibacillus rhamnosus [JTIX]
16122
16035
-
Leu
TAA
[ENA]
¡û
>W1610767397
LNQD01000009
Bacillota
Lacticaseibacillus paracasei casei [LNQD]
65952
65865
-
Leu
TAA
[ENA]
¡û
>W1710032018
AZEB01000086
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
221
308
+
Leu
TAA
[ENA]
¡û
>W1710033028
AZEY01000068
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
36240
36153
-
Leu
TAA
[ENA]
¡û
>W1710033233
AZFC01000035
Bacillota
Levilactobacillus spicheri DSM 15429 [AZFC]
166106
166019
-
Leu
TAA
[ENA]
¡û
>W1710034030
AZFS01000060
Bacillota
Levilactobacillus hammesii DSM 16381 [AZFS]
119280
119367
+
Leu
TAA
[ENA]
¡û
>W1710034408
AZFZ01000016
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
46619
46532
-
Leu
TAA
[ENA]
¡û
>W1710646395
JTHQ01000021
Bacillota
Lacticaseibacillus rhamnosus [JTHQ]
249
336
+
Leu
TAA
[ENA]
¡û
>W1710648048
JTIX01000141
Bacillota
Lacticaseibacillus rhamnosus [JTIX]
16122
16035
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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