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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.447753 (87 seq.)
>W1710862873
LMER01000001
Actinomycetota
Angustibacter sp. Root456 [LMER]
266800
266726
-
Arg
CCG
[ENA]
¡û
>W1711049511
LRQV01000009
Actinomycetota
Micromonospora rosaria [LRQV]
78077
78005
-
Arg
CCG
[ENA]
¡û
>W1711430444
MIJB01000009
Actinomycetota
Aeromicrobium sp. PE09-221 [MIJB]
139494
139420
-
Arg
CCG
[ENA]
¡û
>W1711491919
MKJZ01000001
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
84124
84052
-
Arg
CCG
[ENA]
¡û
>W1711492043
MKKB01000333
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
162550
162478
-
Arg
CCG
[ENA]
¡û
>W1711492215
MKKF01000011
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
263855
263783
-
Arg
CCG
[ENA]
¡û
>W1711575778
MNJM01000084
Actinomycetota
Actinobacteria bacterium 13_1_20CM_3_71_11 [MNJM]
3889
3961
+
Arg
CCG
[ENA]
¡û
>W1711658117
MQMK01000314
Actinomycetota
Micromonospora sp. Rc5 [MQMK]
18359
18285
-
Arg
CCG
[ENA]
¡û
>W1711724833
MTQN01000010
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
1138451
1138379
-
Arg
CCG
[ENA]
¡û
>W1711903148
MZMV01000007
Actinomycetota
Micromonospora wenchangensis [MZMV]
137884
137956
+
Arg
CCG
[ENA]
¡û
>W1711937162
NAPR01000006
Actinomycetota
Micromonospora sp. NBS 11-29 NBS 11/29 [NAPR]
40511
40585
+
Arg
CCG
[ENA]
¡û
>W131159358
AQUZ01000006
Actinomycetota
Kribbella catacumbae DSM 19601 [AQUZ]
189731
189803
+
Arg
CCG
[ENA]
¡û
>W131217156
ATWM01000003
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
306986
307058
+
Arg
CCG
[ENA]
¡û
>W131172403
ARGW01000092
Actinomycetota
Micromonospora sp. CNB394 [ARGW]
375748
375674
-
Arg
CCG
[ENA]
¡û
>W131221985
AUAX01000009
Actinomycetota
Hamadaea tsunoensis DSM 44101 [AUAX]
4896
4968
+
Arg
CCG
[ENA]
¡û
>w012472
AAMN01000001
Actinomycetota
Janibacter sp. HTCC2649 [AAMN]
334534
334608
+
Arg
CCG
[ENA]
¡û
>WENV180344084
OBLK01221976
[OBLK] soil metagenome; Clay
273
201
-
Arg
CCG
[ENA]
¢þ
>W141233320
BAVQ01000020
Actinomycetota
Tomitella biformata AHU 1821 [BAVQ]
25815
25889
+
Arg
CCG
[ENA]
¡û
>WENV183669859
ORJL010885644
[ORJL] groundwater metagenome; groundwater
217
145
-
Arg
CCG
[ENA]
¢þ
>WENV183674511
ORJL011397392
[ORJL] groundwater metagenome; groundwater
33
105
+
Arg
CCG
[ENA]
¢þ
>WENV183719017
PDWJ01008798
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
17866
17939
+
Arg
CCG
[ENA]
¢þ
>WENV183746600
POYE01034504
[POYE] biofilm metagenome; steel pipe from biofilm reactor
681
755
+
Arg
CCG
[ENA]
¢þ
>WENV183749733
PPFU01206174
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3534
3609
+
Arg
CCG
[ENA]
¢þ
>WENV170648542
JRHI01000725
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
15177
15103
-
Arg
CCG
[ENA]
¢þ
>WENV170978501
MTKZ01052015
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
657
585
-
Arg
CCG
[ENA]
¢þ
>C181074291
CP022961
Actinomycetota
Plantactinospora sp. KBS50 [CP022961]
5431181
5431253
+
Arg
CCG
-
¡û
>C191150933
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
763169
763097
-
Arg
CCG
-
¡û
>C191158402
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
758336
758264
-
Arg
CCG
-
¡û
>C191183694
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
646595
646523
-
Arg
CCG
-
¡û
>W141759974
JNZS01000011
Actinomycetota
Micromonospora parva [JNZS]
44337
44263
-
Arg
CCG
[ENA]
¡û
>W141760265
JNZX01002268
Actinomycetota
Dactylosporangium aurantiacum [JNZX]
1363
1435
+
Arg
CCG
[ENA]
¡û
>W141761134
JOAN01000006
Actinomycetota
Micromonospora chokoriensis [JOAN]
15315
15241
-
Arg
CCG
[ENA]
¡û
>W09109261
ABUC01000006
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
355083
355155
+
Arg
CCG
[ENA]
¡û
>W09109338
ABUD01000035
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
3690
3618
-
Arg
CCG
[ENA]
¡û
>W09120561
ACES01000144
Actinomycetota
Micromonospora sp. ATCC 39149 [ACES]
141004
141076
+
Arg
CCG
[ENA]
¡û
>W1910141875
BIFP01000052
Actinomycetota
Micromonosporaceae bacterium KJ-029 [BIFP]
109728
109656
-
Arg
CCG
[ENA]
¡û
>W1910811028
MUYZ01000090
Actinomycetota
Micromonospora sp. MH33 [MUYZ]
5556
5482
-
Arg
CCG
[ENA]
¡û
>W1911495829
OBQK01000001
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
930291
930363
+
Arg
CCG
[ENA]
¡û
>W1911653668
QDGB01000407
Actinomycetota
Micromonospora ureilytica LB19 [QDGB]
11298
11226
-
Arg
CCG
[ENA]
¡û
>W1911676237
QGSY01000147
Actinomycetota
Micromonospora arida LB32 [QGSY]
15528
15454
-
Arg
CCG
[ENA]
¡û
>W1911676317
QGSZ01000357
Actinomycetota
Micromonospora inaquosa LB39 [QGSZ]
1069
1141
+
Arg
CCG
[ENA]
¡û
>W1911770315
QXIQ01000026
Actinomycetota
Micromonospora endophytica JCM 18317 [QXIQ]
8113
8187
+
Arg
CCG
[ENA]
¡û
>W1911817404
QZMN01000002
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
181334
181406
+
Arg
CCG
[ENA]
¡û
>W1810057276
PDHU01000003
Actinomycetota
Micromonospora sp. WMMA1996 [PDHU]
706720
706794
+
Arg
CCG
[ENA]
¡û
>W1810073076
PEFR01000001
Actinomycetota
Verrucosispora sp. CNZ293 [PEFR]
5906670
5906596
-
Arg
CCG
[ENA]
¡û
>W1810172734
PJMP01000001
Actinomycetota
Plantactinospora sp. CNZ320 [PJMP]
3753943
3754016
+
Arg
CCG
[ENA]
¡û
>W1810189350
PKIZ01000002
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
61092
61164
+
Arg
CCG
[ENA]
¡û
>W1810197155
PNOZ01000045
Actinomycetota
Verrucosispora sp. ts21 [PNOZ]
16850
16778
-
Arg
CCG
[ENA]
¡û
>W1810389661
PXXW01000025
Actinomycetota
Micromonospora saelicesensis GAR05 [PXXW]
37016
36942
-
Arg
CCG
[ENA]
¡û
>W1810392229
PYAC01000042
Actinomycetota
Micromonospora noduli MED15 [PYAC]
255005
255077
+
Arg
CCG
[ENA]
¡û
>W1810392289
PYAE01000009
Actinomycetota
Micromonospora noduli ONO86 [PYAE]
15539
15613
+
Arg
CCG
[ENA]
¡û
>W1810392463
PYAH01000055
Actinomycetota
Micromonospora saelicesensis GAR06 [PYAH]
239065
239139
+
Arg
CCG
[ENA]
¡û
>W1810392585
PYAJ01000043
Actinomycetota
Micromonospora saelicesensis Lupac 06 [PYAJ]
37258
37184
-
Arg
CCG
[ENA]
¡û
>W1810394612
PYBV01000001
Actinomycetota
Micromonospora arborensis NRRL 8041 [PYBV]
166465
166537
+
Arg
CCG
[ENA]
¡û
>W1810418036
PYPS01000013
Actinomycetota
Micromonospora sp. RP3T [PYPS]
7718
7644
-
Arg
CCG
[ENA]
¡û
>W1810535051
QDDJ01000013
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
80798
80870
+
Arg
CCG
[ENA]
¡û
>W1810592364
QFXK01000022
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
90757
90685
-
Arg
CCG
[ENA]
¡û
>W1810595107
QGDQ01000005
Actinomycetota
Quadrisphaera granulorum DSM 44889 [QGDQ]
86065
86139
+
Arg
CCG
[ENA]
¡û
>W1810603103
QGKR01000035
Actinomycetota
Micromonospora acroterricola 5R2A7 [QGKR]
2827
2753
-
Arg
CCG
[ENA]
¡û
>W1810603184
QGKS01000290
Actinomycetota
Micromonospora sp. 4G51 [QGKS]
8150
8222
+
Arg
CCG
[ENA]
¡û
>W1810608080
QGSV01000126
Actinomycetota
Micromonospora globispora S2904 [QGSV]
4441
4367
-
Arg
CCG
[ENA]
¡û
>W1810682324
QKUA01000002
Actinomycetota
Micromonospora phaseoli DSM 45730 [QKUA]
169958
170032
+
Arg
CCG
[ENA]
¡û
>W1810697598
QLVD01000023
Actinomycetota
Ornithinimicrobium murale DSM 22056 [QLVD]
64729
64657
-
Arg
CCG
[ENA]
¡û
>W1810906058
QVFU01000001
Actinomycetota
Micromonospora craniellae LHW63014 [QVFU]
168518
168592
+
Arg
CCG
[ENA]
¡û
>W1510071683
CDGT01000015
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
115917
115845
-
Arg
CCG
[ENA]
¡û
>C10108055
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1915437
1915509
+
Arg
CCG
[Ensembl]
¡û
>W1511400307
JTGL01000102
Actinomycetota
Micromonospora sp. HK10 [JTGL]
21360
21286
-
Arg
CCG
[ENA]
¡û
>W1511511378
JXSX01000002
Actinomycetota
Micromonospora haikouensis JXNU-1 [JXSX]
855352
855278
-
Arg
CCG
[ENA]
¡û
>W1511697660
LGEB01000058
Actinomycetota
Micromonospora sp. NRRL B-16802 [LGEB]
31741
31669
-
Arg
CCG
[ENA]
¡û
>W11177043
AFYF01000087
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
30565
30637
+
Arg
CCG
[ENA]
¡û
>C161109647
LT594324
Actinomycetota
Micromonospora narathiwatensis DSM 45248 [LT594324]
4322737
4322809
+
Arg
CCG
-
¡û
>W121124404
BAFE01000003
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
85301
85375
+
Arg
CCG
[ENA]
¡û
>W1610506889
FLRH01000003
Actinomycetota
Micromonospora sediminicola [FLRH]
1574360
1574286
-
Arg
CCG
[ENA]
¡û
>W1610725219
LMER01000001
Actinomycetota
Angustibacter sp. Root456 [LMER]
266800
266726
-
Arg
CCG
[ENA]
¡û
>W1610890640
LRQV01000009
Actinomycetota
Micromonospora rosaria [LRQV]
78077
78005
-
Arg
CCG
[ENA]
¡û
>W1710499107
FLRH01000003
Actinomycetota
Micromonospora sediminicola [FLRH]
1574360
1574286
-
Arg
CCG
[ENA]
¡û
>W1710502814
FMCS01000004
Actinomycetota
Micromonospora chaiyaphumensis [FMCS]
42903
42975
+
Arg
CCG
[ENA]
¡û
>W1710502864
FMCT01000001
Actinomycetota
Micromonospora carbonacea [FMCT]
848872
848800
-
Arg
CCG
[ENA]
¡û
>W1710503607
FMDM01000013
Actinomycetota
Micromonospora humi [FMDM]
174838
174764
-
Arg
CCG
[ENA]
¡û
>W1710504147
FMHU01000001
Actinomycetota
Micromonospora inyonensis [FMHU]
176355
176429
+
Arg
CCG
[ENA]
¡û
>W1710504286
FMHW01000002
Actinomycetota
Micromonospora pallida [FMHW]
7186908
7186834
-
Arg
CCG
[ENA]
¡û
>W1710504515
FMIA01000002
Actinomycetota
Micromonospora yangpuensis [FMIA]
5353826
5353900
+
Arg
CCG
[ENA]
¡û
>W1710531056
FNPH01000003
Actinomycetota
Micromonospora pattaloongensis [FNPH]
98416
98488
+
Arg
CCG
[ENA]
¡û
>W1710542015
FNYV01000003
Actinomycetota
Micromonospora phaseoli [FNYV]
169915
169989
+
Arg
CCG
[ENA]
¡û
>W1710593844
FSQT01000002
Actinomycetota
Micromonospora cremea [FSQT]
1041781
1041855
+
Arg
CCG
[ENA]
¡û
>W1710597455
FTNF01000013
Actinomycetota
Micromonospora avicenniae [FTNF]
50742
50816
+
Arg
CCG
[ENA]
¡û
>W1710610291
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
569803
569875
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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