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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.448583 (33 seq.)
>W131234632
AUKX01000014
Bacteroidota
Arenibacter latericius DSM 15913 [AUKX]
82753
82827
+
Thr
GGT
[ENA]
¡û
>W131164178
ARAI01000029
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
72612
72684
+
Thr
GGT
[ENA]
¡û
>W1711711551
MTAZ01000018
Bacteroidota
Arenibacter amylolyticus AK53 [MTAZ]
23320
23246
-
Thr
GGT
[ENA]
¡û
>WENV180103355
OAPA01020083
[OAPA] marine metagenome; ENVO:00002010
541
469
-
Thr
GGT
[ENA]
¢þ
>WENV180368502
OBOF01112371
[OBOF] marine metagenome; ENVO:00002010
403
331
-
Thr
GGT
[ENA]
¢þ
>W141079210
ATLI01000025
Bacteroidota
Cellulophaga baltica 18 [ATLI]
16671
16597
-
Thr
GGT
[ENA]
¡û
>WENV181392134
OFRW01003583
[OFRW] seawater metagenome; seawater
8
80
+
Thr
GGT
[ENA]
¢þ
>WENV181837953
OGVL01024723
[OGVL] freshwater metagenome; freshwater
107
35
-
Thr
GGT
[ENA]
¢þ
>WENV182591884
OJIO01011504
[OJIO] seawater metagenome; Sea water
181
253
+
Thr
GGT
[ENA]
¢þ
>WENV183626839
OOGK01003722
[OOGK] marine metagenome; seawater
8
80
+
Thr
GGT
[ENA]
¢þ
>WENV183630285
OOGS01001094
[OOGS] marine metagenome; seawater
1431
1359
-
Thr
GGT
[ENA]
¢þ
>WENV170130545
CENR01009465
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
128
202
+
Thr
GGT
[ENA]
¢þ
>WENV170249668
CEQS01029008
[CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
56062
56136
+
Thr
GGT
[ENA]
¢þ
>WENV170568351
FLMP01031792
[FLMP] seawater metagenome; seawater
8
82
+
Thr
GGT
[ENA]
¢þ
>WENV170574481
FLYM01044386
[FLYM] hot springs metagenome; Sediment
168
96
-
Thr
GGT
[ENA]
¢þ
>WENV170664933
JYMV01021174
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
76967
77041
+
Thr
GGT
[ENA]
¢þ
>C181063594
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
644241
644169
-
Thr
GGT
-
¡û
>C181063638
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
635826
635754
-
Thr
GGT
-
¡û
>C181063680
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
978542
978470
-
Thr
GGT
-
¡û
>C181063910
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
731794
731722
-
Thr
GGT
-
¡û
>C191213498
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
922913
922841
-
Thr
GGT
-
¡û
>W1911239235
NSDI01000002
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
248593
248521
-
Thr
GGT
[ENA]
¡û
>W1810659332
QJJZ01000008
Bacteroidota
Arenibacter sp. ARW7G5Y1 [QJJZ]
206145
206217
+
Thr
GGT
[ENA]
¡û
>C151062870
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
2132387
2132461
+
Thr
GGT
[Ensembl]
¡û
>W1510076203
CDOE01000076
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
44994
45066
+
Thr
GGT
[ENA]
¡û
>W1510076242
CDOF01000073
Bacteroidota
Capnocytophaga cynodegmi Ccyn_ATCC49044 [CDOF]
4258
4186
-
Thr
GGT
[ENA]
¡û
>W1510076271
CDOG01000026
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
16168
16240
+
Thr
GGT
[ENA]
¡û
>W1510076313
CDOH01000121
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
13334
13406
+
Thr
GGT
[ENA]
¡û
>W1510076361
CDOI01000171
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
13334
13406
+
Thr
GGT
[ENA]
¡û
>W1510076445
CDOL01000001
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
13307
13379
+
Thr
GGT
[ENA]
¡û
>W1511433238
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
3538700
3538774
+
Thr
GGT
[ENA]
¡û
>W1610082700
BDGL01000023
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
31901
31827
-
Thr
GGT
[ENA]
¡û
>W1710081874
BDGL01000023
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
31901
31827
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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