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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44871 (98 seq.)
>W1710814167
LKJW01000013
Gammaproteobacteria
Aeromonas veronii [LKJW]
290407
290494
+
Ser
TGA
[ENA]
¡û
>W1710814201
LKJW01000035
Gammaproteobacteria
Aeromonas veronii [LKJW]
124443
124356
-
Ser
TGA
[ENA]
¡û
>W1710814290
LKJX01000024
Gammaproteobacteria
Aeromonas veronii [LKJX]
290598
290685
+
Ser
TGA
[ENA]
¡û
>W1710814324
LKJX01000045
Gammaproteobacteria
Aeromonas veronii [LKJX]
115363
115450
+
Ser
TGA
[ENA]
¡û
>W1710815320
LKKH01000006
Gammaproteobacteria
Aeromonas veronii [LKKH]
1196
1109
-
Ser
TGA
[ENA]
¡û
>W1710815382
LKKH01000053
Gammaproteobacteria
Aeromonas veronii [LKKH]
27027
27114
+
Ser
TGA
[ENA]
¡û
>W1711025176
LRBO01000009
Gammaproteobacteria
Aeromonas veronii [LRBO]
20691
20778
+
Ser
TGA
[ENA]
¡û
>W1711025239
LRBO01000048
Gammaproteobacteria
Aeromonas veronii [LRBO]
834
747
-
Ser
TGA
[ENA]
¡û
>W1711050920
LRRV01000001
Gammaproteobacteria
Aeromonas hydrophila [LRRV]
329637
329724
+
Ser
TGA
[ENA]
¡û
>W1711050942
LRRV01000001
Gammaproteobacteria
Aeromonas hydrophila [LRRV]
2214416
2214329
-
Ser
TGA
[ENA]
¡û
>W1711121095
LUHO01000035
Gammaproteobacteria
Aeromonas salmonicida [LUHO]
27618
27705
+
Ser
TGA
[ENA]
¡û
>W1711121169
LUHO01000197
Gammaproteobacteria
Aeromonas salmonicida [LUHO]
15331
15418
+
Ser
TGA
[ENA]
¡û
>W1711263326
LYZG01000012
Gammaproteobacteria
Aeromonas hydrophila [LYZG]
56317
56404
+
Ser
TGA
[ENA]
¡û
>W1711263335
LYZG01000015
Gammaproteobacteria
Aeromonas hydrophila [LYZG]
99929
100016
+
Ser
TGA
[ENA]
¡û
>W1711429519
MIIQ01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIQ]
221201
221288
+
Ser
TGA
[ENA]
¡û
>W1711429593
MIIQ01000041
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIQ]
11548
11461
-
Ser
TGA
[ENA]
¡û
>W1711429624
MIIR01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIR]
221224
221311
+
Ser
TGA
[ENA]
¡û
>W1711429697
MIIR01000046
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIR]
11548
11461
-
Ser
TGA
[ENA]
¡û
>W1711429824
MIIT01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIT]
220956
221043
+
Ser
TGA
[ENA]
¡û
>W1711429888
MIIT01000037
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIT]
11548
11461
-
Ser
TGA
[ENA]
¡û
>W1711487215
MKFU01000023
Gammaproteobacteria
Aeromonas sobria [MKFU]
105138
105225
+
Ser
TGA
[ENA]
¡û
>W1711487251
MKFU01000066
Gammaproteobacteria
Aeromonas sobria [MKFU]
1329
1242
-
Ser
TGA
[ENA]
¡û
>W1711660836
MQSY01000052
Gammaproteobacteria
Aeromonas sp. YN13HZO-058 [MQSY]
43829
43742
-
Ser
TGA
[ENA]
¡û
>W1711660860
MQSY01000062
Gammaproteobacteria
Aeromonas sp. YN13HZO-058 [MQSY]
750
663
-
Ser
TGA
[ENA]
¡û
>W1711667047
MRDF01000001
Gammaproteobacteria
Aeromonas hydrophila [MRDF]
38185
38272
+
Ser
TGA
[ENA]
¡û
>W1711667090
MRDF01000003
Gammaproteobacteria
Aeromonas hydrophila [MRDF]
427241
427154
-
Ser
TGA
[ENA]
¡û
>W1711678627
MRUI01000004
Gammaproteobacteria
Aeromonas veronii [MRUI]
319589
319676
+
Ser
TGA
[ENA]
¡û
>W1711678651
MRUI01000007
Gammaproteobacteria
Aeromonas veronii [MRUI]
50085
49998
-
Ser
TGA
[ENA]
¡û
>W131146049
AQGQ01000029
Gammaproteobacteria
Aeromonas molluscorum 848 [AQGQ]
22916
23003
+
Ser
TGA
[ENA]
¡û
>WENV180006302
FLRY01003971
[FLRY] metagenome; saliva
381
294
-
Ser
TGA
[ENA]
¢þ
>W141007031
AGWR01000018
Gammaproteobacteria
Aeromonas dhakensis SSU [AGWR]
2008
1921
-
Ser
TGA
[ENA]
¡û
>W141007259
AGWV01000003
Gammaproteobacteria
Aeromonas veronii AER397 [AGWV]
3822
3735
-
Ser
TGA
[ENA]
¡û
>W141007270
AGWV01000004
Gammaproteobacteria
Aeromonas veronii AER397 [AGWV]
501807
501894
+
Ser
TGA
[ENA]
¡û
>W141007372
AGWW01000007
Gammaproteobacteria
Aeromonas veronii AMC35 [AGWW]
21702
21615
-
Ser
TGA
[ENA]
¡û
>W141007379
AGWW01000009
Gammaproteobacteria
Aeromonas veronii AMC35 [AGWW]
385716
385803
+
Ser
TGA
[ENA]
¡û
>W141077737
ATFB01000004
Gammaproteobacteria
Aeromonas veronii Hm21 [ATFB]
31542
31455
-
Ser
TGA
[ENA]
¡û
>W141077743
ATFB01000013
Gammaproteobacteria
Aeromonas veronii Hm21 [ATFB]
686
599
-
Ser
TGA
[ENA]
¡û
>W141234122
BAWK01000017
Gammaproteobacteria
Aeromonas taiwanensis [BAWK]
134090
134177
+
Ser
TGA
[ENA]
¡û
>W141234598
BAWQ01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. masoucida NBRC 13784 [BAWQ]
160072
159985
-
Ser
TGA
[ENA]
¡û
>W141234655
BAWQ01000095
Gammaproteobacteria
Aeromonas salmonicida subsp. masoucida NBRC 13784 [BAWQ]
3129
3042
-
Ser
TGA
[ENA]
¡û
>WENV182600397
OJJG01003569
[OJJG] metagenome; faeces
1139
1226
+
Ser
TGA
[ENA]
¢þ
>WENV170002093
AGFT01111150
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
206
293
+
Ser
TGA
[ENA]
¢þ
>W141403342
JDWD01000032
Gammaproteobacteria
Aeromonas dhakensis [JDWD]
2657
2570
-
Ser
TGA
[ENA]
¡û
>C181091007
CP023817
Gammaproteobacteria
Aeromonas sp. CU5 [CP023817]
4260699
4260612
-
Ser
TGA
-
¡û
>C181091047
CP023817
Gammaproteobacteria
Aeromonas sp. CU5 [CP023817]
2587538
2587451
-
Ser
TGA
-
¡û
>C181121515
CP025705
Gammaproteobacteria
Aeromonas caviae R25-6 [CP025705]
2433901
2433988
+
Ser
TGA
-
¡û
>W141822766
JRBE01000001
Gammaproteobacteria
Aeromonas veronii [JRBE]
274568
274481
-
Ser
TGA
[ENA]
¡û
>W1910619973
LJZX01000034
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
931
844
-
Ser
TGA
[ENA]
¡û
>W1910619996
LJZX01000045
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
50793
50880
+
Ser
TGA
[ENA]
¡û
>W1910635102
LMUB01000046
Gammaproteobacteria
Aeromonas sp. ARM81 [LMUB]
8203
8116
-
Ser
TGA
[ENA]
¡û
>W1911178599
NQML01000009
Gammaproteobacteria
Aeromonas sobria TM12 [NQML]
1508
1421
-
Ser
TGA
[ENA]
¡û
>W1911178606
NQML01000014
Gammaproteobacteria
Aeromonas sobria TM12 [NQML]
134846
134933
+
Ser
TGA
[ENA]
¡û
>W1911178720
NQMM01000018
Gammaproteobacteria
Aeromonas sobria TM18 [NQMM]
139000
139087
+
Ser
TGA
[ENA]
¡û
>W1911178778
NQMM01000051
Gammaproteobacteria
Aeromonas sobria TM18 [NQMM]
8319
8406
+
Ser
TGA
[ENA]
¡û
>W1911420902
NXBW01000032
Gammaproteobacteria
Aeromonas caviae ZJ33-3 [NXBW]
6959
6872
-
Ser
TGA
[ENA]
¡û
>W1911705663
QORJ01000044
Gammaproteobacteria
Aeromonas taiwanensis 186 [QORJ]
24834
24921
+
Ser
TGA
[ENA]
¡û
>W1911705749
QORK01000048
Gammaproteobacteria
Aeromonas taiwanensis 198 [QORK]
24786
24873
+
Ser
TGA
[ENA]
¡û
>W1911705835
QORL01000048
Gammaproteobacteria
Aeromonas taiwanensis 1713 [QORL]
24786
24873
+
Ser
TGA
[ENA]
¡û
>W1810090447
PGGC01000005
Gammaproteobacteria
Aeromonas cavernicola MDC 2508 [PGGC]
61109
61022
-
Ser
TGA
[ENA]
¡û
>W1810090516
PGGC01000206
Gammaproteobacteria
Aeromonas cavernicola MDC 2508 [PGGC]
3681
3768
+
Ser
TGA
[ENA]
¡û
>W1810338541
PUTQ01000006
Gammaproteobacteria
Aeromonas hydrophila AFG_SD03_1510_Ahy_093 [PUTQ]
164237
164150
-
Ser
TGA
[ENA]
¡û
>W1810338596
PUTQ01000044
Gammaproteobacteria
Aeromonas hydrophila AFG_SD03_1510_Ahy_093 [PUTQ]
7628
7541
-
Ser
TGA
[ENA]
¡û
>W1810474242
QAIE01000053
Gammaproteobacteria
Aeromonas sp. HMWF036 [QAIE]
19348
19435
+
Ser
TGA
[ENA]
¡û
>W1810475585
QAJD01000046
Gammaproteobacteria
Aeromonas sp. HMWF017 [QAJD]
759
672
-
Ser
TGA
[ENA]
¡û
>W1510064865
CDBJ01000042
Gammaproteobacteria
Aeromonas rivuli DSM 22539 [CDBJ]
153938
154025
+
Ser
TGA
[ENA]
¡û
>W1510065152
CDBN01000015
Gammaproteobacteria
Aeromonas sanarellii LMG 24682 [CDBN]
92193
92106
-
Ser
TGA
[ENA]
¡û
>W1510065945
CDBW01000016
Gammaproteobacteria
Aeromonas sobria CECT 4245 [CDBW]
183288
183375
+
Ser
TGA
[ENA]
¡û
>W1510065967
CDBW01000021
Gammaproteobacteria
Aeromonas sobria CECT 4245 [CDBW]
9880
9967
+
Ser
TGA
[ENA]
¡û
>W1510066218
CDCA01000008
Gammaproteobacteria
Aeromonas tecta CECT 7082 [CDCA]
111881
111968
+
Ser
TGA
[ENA]
¡û
>W1510067415
CDDA01000008
Gammaproteobacteria
Aeromonas bestiarum CECT 4227 [CDDA]
204792
204879
+
Ser
TGA
[ENA]
¡û
>W1510067460
CDDA01000025
Gammaproteobacteria
Aeromonas bestiarum CECT 4227 [CDDA]
57879
57792
-
Ser
TGA
[ENA]
¡û
>W1510067671
CDDD01000004
Gammaproteobacteria
Aeromonas taiwanensis LMG 24683 [CDDD]
11123
11210
+
Ser
TGA
[ENA]
¡û
>WENV11102165
AGFT01111150
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
206
293
+
Ser
TGA
[ENA]
¡û
>W1511452199
JVDW01000018
Gammaproteobacteria
Aeromonas hydrophila 52_AHYD [JVDW]
62058
62145
+
Ser
TGA
[ENA]
¡û
>W1511452222
JVDW01000093
Gammaproteobacteria
Aeromonas hydrophila 52_AHYD [JVDW]
44930
44843
-
Ser
TGA
[ENA]
¡û
>W1511565296
LAFH01000018
Gammaproteobacteria
Aeromonas caviae 8LM [LAFH]
188691
188604
-
Ser
TGA
[ENA]
¡û
>W1511690150
LFXO01000124
Gammaproteobacteria
Aeromonas caviae A23 [LFXO]
23876
23963
+
Ser
TGA
[ENA]
¡û
>C161077209
CP014774
Gammaproteobacteria
Aeromonas veronii AVNIH1 [CP014774]
2273668
2273755
+
Ser
TGA
[Ensembl]
¡û
>C161096967
CP016392
Gammaproteobacteria
Aeromonas hydrophila GYK1 [CP016392]
1863582
1863669
+
Ser
TGA
-
¡û
>C161096992
CP016392
Gammaproteobacteria
Aeromonas hydrophila GYK1 [CP016392]
3759698
3759611
-
Ser
TGA
-
¡û
>W121021147
AGVO01000003
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [AGVO]
29646
29733
+
Ser
TGA
[ENA]
¡û
>W121021160
AGVO01000016
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [AGVO]
220589
220676
+
Ser
TGA
[ENA]
¡û
>W121113633
ALOT01000069
Gammaproteobacteria
Aeromonas sp. 159 [ALOT]
89
2
-
Ser
TGA
[ENA]
¡û
>W121113645
ALOT01000102
Gammaproteobacteria
Aeromonas sp. 159 [ALOT]
19041
19128
+
Ser
TGA
[ENA]
¡û
>W1610461009
FKKY01000001
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
211588
211501
-
Ser
TGA
[ENA]
¡û
>W1610461029
FKKY01000004
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
1582
1495
-
Ser
TGA
[ENA]
¡û
>W1610461116
FKKY02000001
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
211588
211501
-
Ser
TGA
[ENA]
¡û
>W1610461136
FKKY02000004
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
1582
1495
-
Ser
TGA
[ENA]
¡û
>W1610678264
LKJW01000013
Gammaproteobacteria
Aeromonas veronii [LKJW]
290407
290494
+
Ser
TGA
[ENA]
¡û
>W1610678298
LKJW01000035
Gammaproteobacteria
Aeromonas veronii [LKJW]
124443
124356
-
Ser
TGA
[ENA]
¡û
>W1610678387
LKJX01000024
Gammaproteobacteria
Aeromonas veronii [LKJX]
290598
290685
+
Ser
TGA
[ENA]
¡û
>W1610678421
LKJX01000045
Gammaproteobacteria
Aeromonas veronii [LKJX]
115363
115450
+
Ser
TGA
[ENA]
¡û
>W1610679417
LKKH01000006
Gammaproteobacteria
Aeromonas veronii [LKKH]
1196
1109
-
Ser
TGA
[ENA]
¡û
>W1610679479
LKKH01000053
Gammaproteobacteria
Aeromonas veronii [LKKH]
27027
27114
+
Ser
TGA
[ENA]
¡û
>W1610873288
LRBO01000009
Gammaproteobacteria
Aeromonas veronii [LRBO]
20691
20778
+
Ser
TGA
[ENA]
¡û
>W1610873351
LRBO01000048
Gammaproteobacteria
Aeromonas veronii [LRBO]
834
747
-
Ser
TGA
[ENA]
¡û
>W1610892049
LRRV01000001
Gammaproteobacteria
Aeromonas hydrophila [LRRV]
329637
329724
+
Ser
TGA
[ENA]
¡û
>W1610892071
LRRV01000001
Gammaproteobacteria
Aeromonas hydrophila [LRRV]
2214416
2214329
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK