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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44881 (73 seq.)
>W1711183562
LWLC01000045
Actinomycetota
Saccharothrix sp. CB00851 [LWLC]
51888
51803
-
Ser
CGA
[ENA]
¡û
>W1711724974
MTQP01000068
Actinomycetota
Saccharothrix sp. ALI-22-I [MTQP]
285447
285362
-
Ser
CGA
[ENA]
¡û
>W1711766512
MUYM01000024
Actinomycetota
Lentzea kentuckyensis [MUYM]
46052
46137
+
Ser
CGA
[ENA]
¡û
>C171051023
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
2674296
2674209
-
Ser
CGA
-
¡û
>W131222201
AUBB01000027
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
5152
5067
-
Ser
CGA
[ENA]
¡û
>W131163672
AQZX01000030
Actinomycetota
Sporichthya polymorpha DSM 43042 [AQZX]
1540708
1540621
-
Ser
CGA
[ENA]
¡û
>WENV181307877
OFIS01000012
[OFIS] sludge metagenome; sludge
206622
206709
+
Ser
CGA
[ENA]
¢þ
>WENV181401677
OFTX01002493
[OFTX] sludge metagenome; sludge
88
1
-
Ser
CGA
[ENA]
¢þ
>W141259300
CBYP010000030
Actinomycetota
Candidatus Blastococcus massiliensis AP3 [CBYP]
5759
5672
-
Ser
CGA
[ENA]
¡û
>WENV170662932
JXWW01215792
[JXWW] soil metagenome; rice field; organic GM Plot
297
210
-
Ser
CGA
[ENA]
¢þ
>WENV170984426
MWVV01281844
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
17
104
+
Ser
CGA
[ENA]
¢þ
>W09108525
ABTI01000084
Actinomycetota
Catenulispora acidiphila DSM 44928 [ABTI]
1880
1795
-
Ser
CGA
[ENA]
¡û
>W09109021
ABTU01000002
Actinomycetota
Geodermatophilus obscurus DSM 43160 [ABTU]
1980
1893
-
Ser
CGA
[ENA]
¡û
>W141557981
JHVO01000007
Actinomycetota
Geodermatophilaceae bacterium URHB0062 [JHVO]
36606
36519
-
Ser
CGA
[ENA]
¡û
>W141558037
JHVP01000008
Actinomycetota
Geodermatophilaceae bacterium URHA0031 [JHVP]
146015
145930
-
Ser
CGA
[ENA]
¡û
>W141756286
JNXC01000001
Actinomycetota
Saccharothrix sp. NRRL B-16314 [JNXC]
6271
6356
+
Ser
CGA
[ENA]
¡û
>W141758391
JNYO01000035
Actinomycetota
Saccharothrix syringae [JNYO]
41601
41686
+
Ser
CGA
[ENA]
¡û
>W141758700
JNYU01000085
Actinomycetota
Umezawaea tangerina [JNYU]
2614
2529
-
Ser
CGA
[ENA]
¡û
>W141768626
JOFI01000020
Actinomycetota
Lentzea aerocolonigenes [JOFI]
118125
118040
-
Ser
CGA
[ENA]
¡û
>W141771448
JOHE01000101
Actinomycetota
Lentzea aerocolonigenes [JOHE]
1063
976
-
Ser
CGA
[ENA]
¡û
>W1910182904
BJNG01000044
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
1143
1056
-
Ser
CGA
[ENA]
¡û
>W1910548141
FZOH01000011
Actinomycetota
Geodermatophilus saharensis DSM 45423 [FZOH]
114836
114749
-
Ser
CGA
[ENA]
¡û
>W1910548510
FZOO01000006
Actinomycetota
Geodermatophilus pulveris DSM 46839 [FZOO]
22204
22291
+
Ser
CGA
[ENA]
¡û
>W1910646718
LWUA01000038
Actinomycetota
Blastococcus sp. CCUG 61487 [LWUA]
7801
7888
+
Ser
CGA
[ENA]
¡û
>W1911385158
NVPT01000114
Actinomycetota
Geodermatophilus chilensis B12 [NVPT]
3534
3448
-
Ser
CGA
[ENA]
¡û
>W1911492091
OBDO01000005
Actinomycetota
Geodermatophilus sabuli DSM 46844 [OBDO]
43467
43554
+
Ser
CGA
[ENA]
¡û
>W1810222176
POQT01000072
Actinomycetota
Blastococcus saxobsidens DSM 44509 [POQT]
916
829
-
Ser
CGA
[ENA]
¡û
>W1810295976
PTIX01000012
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
145502
145415
-
Ser
CGA
[ENA]
¡û
>W1810364401
PVTF01000001
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
401509
401594
+
Ser
CGA
[ENA]
¡û
>W1810364471
PVTG01000010
Actinomycetota
Geodermatophilus tzadiensis DSM 45416 [PVTG]
92959
93046
+
Ser
CGA
[ENA]
¡û
>W1810393085
PYAX01000005
Actinomycetota
Saccharothrix carnea CGMCC 4.7097 [PYAX]
520579
520664
+
Ser
CGA
[ENA]
¡û
>W1810592190
QFWW01000004
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
79287
79374
+
Ser
CGA
[ENA]
¡û
>W1810597137
QGHB01000001
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
890875
890960
+
Ser
CGA
[ENA]
¡û
>W1810609405
QGTX01000001
Actinomycetota
Geodermatophilus normandii DSM 45417 [QGTX]
869457
869370
-
Ser
CGA
[ENA]
¡û
>W1810676857
QKMH01000012
Actinomycetota
Geodermatophilus sp. DSM 44511 [QKMH]
60655
60742
+
Ser
CGA
[ENA]
¡û
>W1810679036
QKNV01000357
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
2237
2322
+
Ser
CGA
[ENA]
¡û
>W1810697029
QLTT01000012
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
289831
289746
-
Ser
CGA
[ENA]
¡û
>W1810733376
QOHF01000012
Actinomycetota
Geodermatophilus sp. TF02-6 [QOHF]
47965
48052
+
Ser
CGA
[ENA]
¡û
>W1810733591
QOHJ01000008
Actinomycetota
Blastococcus sp. TF02A-30 [QOHJ]
158184
158271
+
Ser
CGA
[ENA]
¡û
>W1810763056
QQAU01000014
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
237707
237622
-
Ser
CGA
[ENA]
¡û
>W1810885763
QUNO01000004
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
361794
361879
+
Ser
CGA
[ENA]
¡û
>W1810914996
QVQH01000004
Actinomycetota
Geodermatophilus sp. LHW52908 [QVQH]
208174
208089
-
Ser
CGA
[ENA]
¡û
>W1510013114
BBOJ01000001
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
618504
618589
+
Ser
CGA
[ENA]
¡û
>C10102565
CP001700
Actinomycetota
Catenulispora acidiphila DSM 44928 [CP001700]
9940082
9940167
+
Ser
CGA
[Ensembl]
¡û
>C10107391
CP001867
Actinomycetota
Geodermatophilus obscurus DSM 43160 [CP001867]
516146
516233
+
Ser
CGA
[Ensembl]
¡û
>W1511307091
JPMX01000068
Actinomycetota
Modestobacter caceresii KNN45-2b [JPMX]
5796
5709
-
Ser
CGA
[ENA]
¡û
>W1511529148
JYJG01000119
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
7732
7817
+
Ser
CGA
[ENA]
¡û
>W1511697482
LGDY01000133
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
37466
37553
+
Ser
CGA
[ENA]
¡û
>W1511697738
LGED01000046
Actinomycetota
Saccharothrix sp. NRRL B-16348 [LGED]
64715
64630
-
Ser
CGA
[ENA]
¡û
>C121016091
FO117623
Actinomycetota
Blastococcus saxobsidens DD2 [FO117623]
453366
453453
+
Ser
CGA
[Ensembl]
¡û
>C121016189
FO203431
Actinomycetota
Modestobacter marinus BC501 [FO203431]
547262
547347
+
Ser
CGA
[Ensembl]
¡û
>C131019794
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
233066
233151
+
Ser
CGA
[Ensembl]
¡û
>W1611063219
MBFF01001491
Actinomycetota
Modestobacter sp. VKM Ac-2676 [MBFF]
416
329
-
Ser
CGA
[ENA]
¡û
>W1710512194
FMZF01000002
Actinomycetota
Geodermatophilus telluris [FMZF]
257300
257387
+
Ser
CGA
[ENA]
¡û
>W1710515813
FNCC01000018
Actinomycetota
Lentzea fradiae [FNCC]
163226
163141
-
Ser
CGA
[ENA]
¡û
>W1710519463
FNET01000006
Actinomycetota
Lentzea albidocapillata violacea [FNET]
399000
399085
+
Ser
CGA
[ENA]
¡û
>W1710522437
FNHE01000006
Actinomycetota
Geodermatophilus siccatus [FNHE]
262694
262609
-
Ser
CGA
[ENA]
¡û
>W1710524306
FNIQ01000001
Actinomycetota
Geodermatophilus sp. DSM 45219 [FNIQ]
734213
734126
-
Ser
CGA
[ENA]
¡û
>W1710524664
FNIX01000004
Actinomycetota
Lentzea jiangxiensis [FNIX]
488445
488360
-
Ser
CGA
[ENA]
¡û
>W1710530452
FNOT01000004
Actinomycetota
Geodermatophilus africanus [FNOT]
470728
470640
-
Ser
CGA
[ENA]
¡û
>W1710530746
FNOZ01000030
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
19844
19929
+
Ser
CGA
[ENA]
¡û
>W1710544055
FOAO01000002
Actinomycetota
Blastococcus sp. DSM 46786 [FOAO]
83096
83183
+
Ser
CGA
[ENA]
¡û
>W1710550918
FOFR01000002
Actinomycetota
Lentzea xinjiangensis [FOFR]
837508
837423
-
Ser
CGA
[ENA]
¡û
>W1710551048
FOFT01000013
Actinomycetota
Lentzea flaviverrucosa [FOFT]
48259
48344
+
Ser
CGA
[ENA]
¡û
>W1710551106
FOFV01000001
Actinomycetota
Lentzea albida [FOFV]
192529
192614
+
Ser
CGA
[ENA]
¡û
>W1710554082
FOIE01000005
Actinomycetota
Geodermatophilus poikilotrophus [FOIE]
382526
382441
-
Ser
CGA
[ENA]
¡û
>W1710561654
FOOI01000003
Actinomycetota
Actinopolymorpha cephalotaxi [FOOI]
68319
68404
+
Ser
CGA
[ENA]
¡û
>W1710571757
FOWE01000003
Actinomycetota
Geodermatophilus obscurus [FOWE]
254153
254240
+
Ser
CGA
[ENA]
¡û
>W1710572371
FOWQ01000003
Actinomycetota
Geodermatophilus dictyosporus DSM 44208 [FOWQ]
244797
244884
+
Ser
CGA
[ENA]
¡û
>W1710577714
FPBA01000001
Actinomycetota
Geodermatophilus amargosae [FPBA]
291777
291864
+
Ser
CGA
[ENA]
¡û
>W1710584863
FQVX01000001
Actinomycetota
Geodermatophilus nigrescens [FQVX]
268243
268330
+
Ser
CGA
[ENA]
¡û
>W1710593490
FRDM01000030
Actinomycetota
Geodermatophilus obscurus [FRDM]
2596
2681
+
Ser
CGA
[ENA]
¡û
>W1710606851
FWYC01000015
Actinomycetota
Lentzea albidocapillata [FWYC]
151027
150942
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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