This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44888 (13 seq.)
>WENV170685342
LFRM01085719
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
14856
14943
+
Ser
TGA
[ENA]
¢þ
>C181175833
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
1551270
1551357
+
Ser
TGA
-
¡û
>C181215535
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1565931
1566018
+
Ser
TGA
-
¡û
>W1810181811
PJZF01000001
Gammaproteobacteria
Chimaeribacter californicus 2015Iso6 [PJZF]
148301
148388
+
Ser
TGA
[ENA]
¡û
>W1810744618
QOVA01000020
Gammaproteobacteria
Edaphovirga cremea DSM 105170 [QOVA]
59018
58931
-
Ser
TGA
[ENA]
¡û
>C151093903
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
39065
39152
+
Ser
TGA
-
¡û
>C151093957
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
39288
39375
+
Ser
TGA
-
¡û
>C151094022
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
1289655
1289742
+
Ser
TGA
-
¡û
>C151094090
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1999005
1999092
+
Ser
TGA
-
¡û
>C151094149
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1031592
1031505
-
Ser
TGA
-
¡û
>C151094186
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
2064587
2064674
+
Ser
TGA
-
¡û
>C151094238
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
2029132
2029219
+
Ser
TGA
-
¡û
>C161041371
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
2023413
2023500
+
Ser
TGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK