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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44897 (40 seq.)
>W1711326568
MBFJ01000052
Actinomycetota
Jiangella alba [MBFJ]
75112
75197
+
Leu
GAG
[ENA]
¡û
>W1711343486
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
4754465
4754378
-
Leu
GAG
[ENA]
¡û
>W1711343536
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
4757479
4757392
-
Leu
GAG
[ENA]
¡û
>W1711343560
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
714396
714483
+
Leu
GAG
[ENA]
¡û
>W1711343649
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3510061
3509976
-
Leu
GAG
[ENA]
¡û
>W1711343717
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
228923
228836
-
Leu
GAG
[ENA]
¡û
>W1711343735
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
2567355
2567440
+
Leu
GAG
[ENA]
¡û
>W1711343807
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
2920961
2920876
-
Leu
GAG
[ENA]
¡û
>W1711343843
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
2579789
2579874
+
Leu
GAG
[ENA]
¡û
>W1711343929
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
1319918
1319833
-
Leu
GAG
[ENA]
¡û
>W1711343981
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
1033434
1033349
-
Leu
GAG
[ENA]
¡û
>W1711427777
MIFY01000009
Actinomycetota
Pseudonocardia autotrophica [MIFY]
82187
82272
+
Leu
GAG
[ENA]
¡û
>W1711427960
MIGB01000018
Actinomycetota
Pseudonocardia autotrophica [MIGB]
110522
110607
+
Leu
GAG
[ENA]
¡û
>W131011154
AICY01000123
Actinomycetota
Saccharomonospora saliphila YIM 90502 [AICY]
13992
14079
+
Leu
GAG
[ENA]
¡û
>W141220385
AZXT01000008
Actinomycetota
Jiangella gansuensis DSM 44835 [AZXT]
51911
51996
+
Leu
GAG
[ENA]
¡û
>WENV170648755
JRHI01001905
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
6559
6644
+
Leu
GAG
[ENA]
¢þ
>C191005758
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
1724230
1724145
-
Leu
GAG
-
¡û
>W1910179087
BJFL01000038
Actinomycetota
Gandjariella thermophila UICC B-83 SL3-2-4 [BJFL]
7996
7911
-
Leu
GAG
[ENA]
¡û
>W1910182964
BJNH01000136
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
2381
2296
-
Leu
GAG
[ENA]
¡û
>W1911738067
QUAL01000187
Actinomycetota
Jiangella rhizosphaerae NEAU-YY265 [QUAL]
24699
24784
+
Leu
GAG
[ENA]
¡û
>W1810121478
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4610862
4610777
-
Leu
GAG
[ENA]
¡û
>W1810223832
POTW01000040
Actinomycetota
Jiangella anatolica GTF31 [POTW]
196
281
+
Leu
GAG
[ENA]
¡û
>W1810400553
PYGE01000019
Actinomycetota
Haloactinopolyspora alba DSM 45211 [PYGE]
41490
41575
+
Leu
GAG
[ENA]
¡û
>W1810705015
QMIG01000013
Actinomycetota
Phytoactinopolyspora halophila YIM 96934 [QMIG]
80762
80847
+
Leu
GAG
[ENA]
¡û
>W1810898895
QVAI01000010
Actinomycetota
Jiangella endophytica KE2-3 [QVAI]
50437
50352
-
Leu
GAG
[ENA]
¡û
>C151074988
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
4261393
4261480
+
Leu
GAG
-
¡û
>C151087160
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4877980
4877895
-
Leu
GAG
-
¡û
>C151087223
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
857897
857810
-
Leu
GAG
-
¡û
>W10118391
ADUJ01000170
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
10561
10476
-
Leu
GAG
[ENA]
¡û
>W10128161
AEGE01001260
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
684
769
+
Leu
GAG
[ENA]
¡û
>W11123466
ADUJ01000170
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
10561
10476
-
Leu
GAG
[ENA]
¡û
>W11136855
AEGE01001260
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
684
769
+
Leu
GAG
[ENA]
¡û
>W1511594788
LBMC01000047
Actinomycetota
Jiangella alkaliphila KCTC 19222 [LBMC]
32890
32805
-
Leu
GAG
[ENA]
¡û
>W1511689982
LFXL01000004
Actinomycetota
Jiangella muralis DSM 45357 [LFXL]
14343
14428
+
Leu
GAG
[ENA]
¡û
>C161040377
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
1461669
1461756
+
Leu
GAG
[Ensembl]
¡û
>C161061303
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
3988632
3988545
-
Leu
GAG
[Ensembl]
¡û
>W1710537877
FNUC01000003
Actinomycetota
Jiangella alba [FNUC]
2225844
2225759
-
Leu
GAG
[ENA]
¡û
>W1710558789
FOME01000001
Actinomycetota
Saccharopolyspora kobensis jiangxiensis [FOME]
1356476
1356561
+
Leu
GAG
[ENA]
¡û
>W1710570156
FOUY01000021
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
119795
119882
+
Leu
GAG
[ENA]
¡û
>W1710589948
FRAP01000004
Actinomycetota
Pseudonocardia thermophila [FRAP]
328746
328835
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK