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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.449032 (4 seq.)
>W1711404030
MFXG01000083
Unclassified
Candidatus Peregrinibacteria bacterium RIFOXYA2_FULL_33_7 [MFXG]
1137
1063
-
Arg
TCT
[ENA]
¡û
>W1711404223
MFXM01000200
Unclassified
Candidatus Peregrinibacteria bacterium RIFOXYC2_FULL_33_13 [MFXM]
4936
5010
+
Arg
TCT
[ENA]
¡û
>W1511596695
LBOO01000019
Unclassified
Candidatus Peregrinibacteria bacterium GW2011_GWA2_33_10 GW2011_GWA2_33_10 [LBOO]
14312
14238
-
Arg
TCT
[ENA]
¡û
>W1511596786
LBOR01000007
Unclassified
Candidatus Peregrinibacteria bacterium GW2011_GWC2_33_13 GW2011_GWC2_33_13 [LBOR]
26863
26789
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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