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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44906 (42 seq.)
>W131063380
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1850902
1850988
+
Ser
TGA
[ENA]
¡û
>W131087170
AOCI01000080
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
785
871
+
Ser
TGA
[ENA]
¡û
>W131203787
ASZQ01000268
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
18439
18525
+
Ser
TGA
[ENA]
¡û
>W1711377895
MDZH01000146
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
10225
10139
-
Ser
TGA
[ENA]
¡û
>W1711603039
MOLN01000153
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
10564
10478
-
Ser
TGA
[ENA]
¡û
>W1711772036
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
61573
61659
+
Ser
TGA
[ENA]
¡û
>C171016636
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2881782
2881868
+
Ser
TGA
-
¡û
>C171112064
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
3349198
3349284
+
Ser
TGA
-
¡û
>WENV180110709
OAPN01004575
[OAPN] marine metagenome; 2011
153
239
+
Ser
TGA
[ENA]
¢þ
>W141065564
AQPY01000648
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
135
221
+
Ser
TGA
[ENA]
¡û
>W141242357
CAIH01000026
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
5599
5685
+
Ser
TGA
[ENA]
¡û
>W141242398
CAII01000134
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
12248
12162
-
Ser
TGA
[ENA]
¡û
>W141242470
CAIJ01000712
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
10172
10086
-
Ser
TGA
[ENA]
¡û
>W141242503
CAIK01000411
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
10432
10346
-
Ser
TGA
[ENA]
¡û
>W141242526
CAIL01000119
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
10804
10890
+
Ser
TGA
[ENA]
¡û
>W141242551
CAIM01000129
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
5225
5139
-
Ser
TGA
[ENA]
¡û
>W141242621
CAIN01000438
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
196
282
+
Ser
TGA
[ENA]
¡û
>W141242633
CAIO01000118
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
12512
12426
-
Ser
TGA
[ENA]
¡û
>W141242674
CAIP01000095
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
4357
4443
+
Ser
TGA
[ENA]
¡û
>W141242720
CAIQ01000187
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
968
882
-
Ser
TGA
[ENA]
¡û
>C08006363
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
5020572
5020486
-
Ser
TGA
[Ensembl]
¡û
>WENV170680659
LFEF01008260
[LFEF] freshwater metagenome; waterbloom
18652
18566
-
Ser
TGA
[ENA]
¢þ
>C181046173
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
4333832
4333918
+
Ser
TGA
-
¡û
>C191007275
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2895456
2895370
-
Ser
TGA
-
¡û
>W1910020357
BDSG01000060
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
18352
18438
+
Ser
TGA
[ENA]
¡û
>W1910020408
BDSM01000050
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
119193
119279
+
Ser
TGA
[ENA]
¡û
>W1910038661
BEIU01000010
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
54465
54551
+
Ser
TGA
[ENA]
¡û
>W1910038688
BEIV01000016
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
54713
54799
+
Ser
TGA
[ENA]
¡û
>W1910067377
BEYQ01000018
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
52904
52818
-
Ser
TGA
[ENA]
¡û
>W1910067402
BFAC01000008
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
26333
26419
+
Ser
TGA
[ENA]
¡û
>W1910142337
BIFY01000069
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
10289
10203
-
Ser
TGA
[ENA]
¡û
>W1910665564
MCIH01000045
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
9236
9150
-
Ser
TGA
[ENA]
¡û
>W1910768670
MOLZ01000048
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
692
778
+
Ser
TGA
[ENA]
¡û
>C151079367
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2883611
2883697
+
Ser
TGA
[Ensembl]
¡û
>C151080706
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
5621717
5621631
-
Ser
TGA
-
¡û
>W1510013631
BBPA01000051
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
62083
61997
-
Ser
TGA
[ENA]
¡û
>W1610550809
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1288880
1288794
-
Ser
TGA
[ENA]
¡û
>W1710004750
AJHB01001666
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
919
833
-
Ser
TGA
[ENA]
¡û
>W1710005100
AJUS01001743
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
919
833
-
Ser
TGA
[ENA]
¡û
>W1710005137
AJUT01001641
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
919
833
-
Ser
TGA
[ENA]
¡û
>W1710005173
AJUU01001627
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
923
837
-
Ser
TGA
[ENA]
¡û
>W1710660686
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1288880
1288794
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK