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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44922 (43 seq.)
>W1710853375
LLWP01000004
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
629947
630032
+
Ser
TGA
[ENA]
¡û
>W1710888334
LMZQ01000039
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
27248
27163
-
Ser
TGA
[ENA]
¡û
>W1711502843
MKTB01000018
Bacteroidota
Bacteroidetes bacterium 43-16 [MKTB]
80308
80223
-
Ser
TGA
[ENA]
¡û
>W1712082047
NHOT01000002
Bacteroidota
Pedobacter sp. AJM [NHOT]
203190
203275
+
Ser
TGA
[ENA]
¡û
>C171057655
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
6501571
6501658
+
Ser
TGA
-
¡û
>C171117359
CP021237
Bacteroidota
Sphingobacteriaceae bacterium GW460-11-11-14-LB5 [CP021237]
2007926
2007839
-
Ser
TGA
-
¡û
>WENV180694693
OCZS012576929
[OCZS] soil metagenome; soil
235
150
-
Ser
TGA
[ENA]
¢þ
>W141075049
ASZT01000192
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
63
150
+
Ser
TGA
[ENA]
¡û
>W141075075
ASZT01000534
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
37000
36913
-
Ser
TGA
[ENA]
¡û
>W141075096
ASZT01000855
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
2
89
+
Ser
TGA
[ENA]
¡û
>W141075097
ASZT01000857
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
146
233
+
Ser
TGA
[ENA]
¡û
>W141075098
ASZT01000858
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
9
96
+
Ser
TGA
[ENA]
¡û
>W141142858
AWRU01000008
Bacteroidota
Pedobacter sp. V48 [AWRU]
16149
16062
-
Ser
TGA
[ENA]
¡û
>W141187605
AYMG01000019
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
78153
78068
-
Ser
TGA
[ENA]
¡û
>W141350112
JCKI01000006
Bacteroidota
Pedobacter sp. R20-19 [JCKI]
46887
46802
-
Ser
TGA
[ENA]
¡û
>WENV183742619
PJUI01000031
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
263986
263901
-
Ser
TGA
[ENA]
¢þ
>WENV183743551
PJUJ01005504
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
759
844
+
Ser
TGA
[ENA]
¢þ
>C181094346
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
2345632
2345717
+
Ser
TGA
-
¡û
>C181094347
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
2347560
2347645
+
Ser
TGA
-
¡û
>C191226447
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
5089012
5089097
+
Ser
TGA
-
¡û
>C191226448
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
5101131
5101218
+
Ser
TGA
-
¡û
>C191226449
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
5121492
5121577
+
Ser
TGA
-
¡û
>W1910378039
FUKX01000011
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
120156
120243
+
Ser
TGA
[ENA]
¡û
>W1910378076
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
178343
178430
+
Ser
TGA
[ENA]
¡û
>W1910378077
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
222253
222340
+
Ser
TGA
[ENA]
¡û
>W1911647656
QAJQ01000012
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
24227
24316
+
Ser
TGA
[ENA]
¡û
>W1810503628
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
750133
750046
-
Ser
TGA
[ENA]
¡û
>W1810503639
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
127579
127492
-
Ser
TGA
[ENA]
¡û
>W1810503640
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
85658
85571
-
Ser
TGA
[ENA]
¡û
>W1810704348
QMHQ01000002
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
12208
12121
-
Ser
TGA
[ENA]
¡û
>W1810704349
QMHQ01000002
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
10666
10581
-
Ser
TGA
[ENA]
¡û
>W1810720092
QNQU01000025
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
64761
64847
+
Ser
TGA
[ENA]
¡û
>W1810761054
QPKV01000002
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
22625
22538
-
Ser
TGA
[ENA]
¡û
>C151047396
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1871793
1871708
-
Ser
TGA
[Ensembl]
¡û
>C151047407
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1350065
1349978
-
Ser
TGA
[Ensembl]
¡û
>C151047408
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1298961
1298874
-
Ser
TGA
[Ensembl]
¡û
>W1511390952
JSYN01000004
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
324079
323992
-
Ser
TGA
[ENA]
¡û
>W1610716499
LLWP01000004
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
629947
630032
+
Ser
TGA
[ENA]
¡û
>W1610733597
LMLE01000001
Bacteroidota
Pedobacter sp. Leaf41 [LMLE]
1083688
1083603
-
Ser
TGA
[ENA]
¡û
>W1610748712
LMZQ01000039
Bacteroidota
Pedobacter ginsenosidimutans [LMZQ]
27248
27163
-
Ser
TGA
[ENA]
¡û
>W1710512283
FMZH01000004
Bacteroidota
Pedobacter soli [FMZH]
501940
501853
-
Ser
TGA
[ENA]
¡û
>W1710512298
FMZH01000007
Bacteroidota
Pedobacter soli [FMZH]
104077
103992
-
Ser
TGA
[ENA]
¡û
>W1710606806
FWYB01000017
Bacteroidota
Pedobacter nyackensis [FWYB]
124739
124652
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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