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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.449236 (5 seq.)
>WENV180242063
OBDI01071542
[OBDI] metagenome; diffuse fluid
202
130
-
Asn
GTT
[ENA]
¢þ
>WENV180252499
OBEQ010454500
[OBEQ] groundwater metagenome; groundwater
2972
3048
+
Asn
GTT
[ENA]
¢þ
>WENV180253236
OBEQ010518128
[OBEQ] groundwater metagenome; groundwater
129
57
-
Asn
GTT
[ENA]
¢þ
>WENV180270308
OBEQ012155680
[OBEQ] groundwater metagenome; groundwater
423
351
-
Asn
GTT
[ENA]
¢þ
>WENV170979952
MTKZ01116802
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
879
953
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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