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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44932 (36 seq.)
>W131156895
AQQG01000143
Bacillota
Clostridium diolis DSM 15410 [AQQG]
30434
30346
-
Ser
ACT
[ENA]
¡û
>W1711294014
LZZB01000015
Bacillota
Clostridium beijerinckii [LZZB]
43857
43769
-
Ser
ACT
[ENA]
¡û
>W1711294027
LZZC01000003
Bacillota
Clostridium beijerinckii [LZZC]
32917
32829
-
Ser
ACT
[ENA]
¡û
>W1711294121
LZZD01000045
Bacillota
Clostridium beijerinckii [LZZD]
34353
34441
+
Ser
ACT
[ENA]
¡û
>W1711294167
LZZE01000041
Bacillota
Clostridium beijerinckii [LZZE]
36518
36606
+
Ser
ACT
[ENA]
¡û
>W1711294215
LZZF01000039
Bacillota
Clostridium beijerinckii [LZZF]
30714
30626
-
Ile
AAT
[ENA]
¡û
>W1711294239
LZZG01000023
Bacillota
Clostridium beijerinckii [LZZG]
50202
50290
+
Ile
AAT
[ENA]
¡û
>W1711294292
LZZH01000076
Bacillota
Clostridium beijerinckii [LZZH]
1278
1190
-
Ile
AAT
[ENA]
¡û
>W1711294308
LZZI01000015
Bacillota
Clostridium beijerinckii [LZZI]
6253
6341
+
Ser
ACT
[ENA]
¡û
>W1711294373
LZZJ01000096
Bacillota
Clostridium beijerinckii [LZZJ]
50977
51065
+
Ser
ACT
[ENA]
¡û
>W1711294409
LZZK01000002
Bacillota
Clostridium beijerinckii [LZZK]
110352
110440
+
Ser
ACT
[ENA]
¡û
>W1711320467
MBAF01000043
Bacillota
Clostridium beijerinckii [MBAF]
256586
256674
+
Ser
ACT
[ENA]
¡û
>W1711794354
MWMH01000005
Bacillota
Clostridium beijerinckii [MWMH]
226487
226575
+
Ser
ACT
[ENA]
¡û
>W1712096545
NHZR01000004
Bacillota
Clostridium diolis [NHZR]
182613
182525
-
Ser
ACT
[ENA]
¡û
>C171045865
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
3590702
3590614
-
Ser
ACT
-
¡û
>C005118
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
3549425
3549338
-
Ile
AAT
[Ensembl]
¡û
>w011459
AALO01000008
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
85445
85356
-
Ile
AAT
[ENA]
¡û
>WENV180232051
OBCO01000073
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
94739
94826
+
Ile
AAT
[ENA]
¢þ
>WENV180233061
OBCP01000102
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
50235
50322
+
Ile
AAT
[ENA]
¢þ
>WENV180569728
OCLR01000360
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
17975
18062
+
Ile
AAT
[ENA]
¢þ
>WENV180570514
OCLS01000186
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
50235
50322
+
Ile
AAT
[ENA]
¢þ
>WENV180571598
OCLT01000221
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
50235
50322
+
Ile
AAT
[ENA]
¢þ
>WENV180573658
OCLW01000094
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
50226
50313
+
Ile
AAT
[ENA]
¢þ
>WENV180639903
OCRL01000217
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
50235
50322
+
Ile
AAT
[ENA]
¢þ
>WENV180640633
OCRM01000071
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
145170
145083
-
Ile
AAT
[ENA]
¢þ
>W141083116
AUPH01000910
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
1150
1238
+
Ser
ACT
[ENA]
¡û
>W141200279
AYXR01000027
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
40094
40006
-
Ser
ACT
[ENA]
¡û
>C181203683
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
3703855
3703768
-
Ser
ACT
-
¡û
>W1810147469
PIQP01000002
Bacillota
Clostridium beijerinckii WB [PIQP]
139713
139626
-
Ser
ACT
[ENA]
¡û
>W1810250487
PQCR01000027
Bacillota
Clostridium sp. 2-1 [PQCR]
56567
56654
+
Ser
ACT
[ENA]
¡û
>W1810271484
PRKY01000041
Bacillota
Clostridium diolis WST [PRKY]
15988
16075
+
Ser
ACT
[ENA]
¡û
>C151012401
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
3549422
3549334
-
Ile
AAT
[Ensembl]
¡û
>C151088303
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
2622097
2622185
+
Ser
ACT
-
¡û
>C161023510
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
3752986
3752898
-
Ser
ACT
[Ensembl]
¡û
>W121102348
AKWA01000032
Bacillota
Clostridium beijerinckii G117 [AKWA]
139713
139625
-
Ser
ACT
[ENA]
¡û
>W1611062490
MBAF01000043
Bacillota
Clostridium beijerinckii [MBAF]
256586
256674
+
Ser
ACT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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