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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.449634 (116 seq.)
>W1710880225
LMSE01000003
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
284279
284205
-
Gln
CTG
[ENA]
¡û
>W1711724105
MTPX01000003
Actinomycetota
Actinomyces ruminis CtC 72 [MTPX]
94263
94189
-
Gln
CTG
[ENA]
¡û
>C171108518
CP020468
Actinomycetota
Actinomyces gaoshouyii pika_114 [CP020468]
743922
743994
+
Gln
CTG
-
¡û
>W131001202
AGWM01000011
Actinomycetota
Actinotignum schaalii FB123-CNA-2 [AGWM]
274724
274650
-
Gln
CTG
[ENA]
¡û
>W131222660
AUBL01000031
Actinomycetota
Actinomyces dentalis DSM 19115 [AUBL]
3678
3750
+
Gln
CTG
[ENA]
¡û
>WENV180137426
OATO01022664
[OATO] human gut metagenome; faeces
344
416
+
Gln
CTG
[ENA]
¢þ
>WENV180190660
OAXA01000125
[OAXA] human gut metagenome; faeces
10863
10935
+
Gln
CTG
[ENA]
¢þ
>W141024100
AKGF01000023
Actinomycetota
Actinomyces timonensis DSM 23838 [AKGF]
193047
193119
+
Gln
CTG
[ENA]
¡û
>WENV180410865
OBUX01014140
[OBUX] human gut metagenome; faeces
326
254
-
Gln
CTG
[ENA]
¢þ
>WENV180428009
OBWB01002334
[OBWB] human gut metagenome; faeces
393
465
+
Gln
CTG
[ENA]
¢þ
>WENV180505131
OCAO01009511
[OCAO] human gut metagenome; faeces
309
237
-
Gln
CTG
[ENA]
¢þ
>WENV180732813
ODGY01004543
[ODGY] human metagenome; G_DNA_Supragingival plaque
1084
1156
+
Gln
CTG
[ENA]
¢þ
>WENV180732941
ODGY01008856
[ODGY] human metagenome; G_DNA_Supragingival plaque
608
682
+
Gln
CTG
[ENA]
¢þ
>WENV180750698
ODHS01005917
[ODHS] human metagenome; G_DNA_Supragingival plaque
2716
2788
+
Gln
CTG
[ENA]
¢þ
>WENV180765246
ODIB01052226
[ODIB] human metagenome; G_DNA_Supragingival plaque
200
128
-
Gln
CTG
[ENA]
¢þ
>WENV180777220
ODIL01000478
[ODIL] human metagenome; G_DNA_Supragingival plaque
1222
1148
-
Gln
CTG
[ENA]
¢þ
>WENV180777332
ODIL01002087
[ODIL] human metagenome; G_DNA_Supragingival plaque
3005
2933
-
Gln
CTG
[ENA]
¢þ
>WENV180781834
ODIP01005254
[ODIP] human metagenome; G_DNA_Supragingival plaque
2135
2063
-
Gln
CTG
[ENA]
¢þ
>WENV180781871
ODIP01006769
[ODIP] human metagenome; G_DNA_Supragingival plaque
1936
1862
-
Gln
CTG
[ENA]
¢þ
>WENV180786684
ODIS01000045
[ODIS] human metagenome; G_DNA_Supragingival plaque
282
210
-
Gln
CTG
[ENA]
¢þ
>WENV180787332
ODIS01003912
[ODIS] human metagenome; G_DNA_Supragingival plaque
5292
5218
-
Gln
CTG
[ENA]
¢þ
>WENV180787640
ODIS01010507
[ODIS] human metagenome; G_DNA_Supragingival plaque
412
484
+
Gln
CTG
[ENA]
¢þ
>WENV180804550
ODJG01005462
[ODJG] human metagenome; G_DNA_Supragingival plaque
3311
3237
-
Gln
CTG
[ENA]
¢þ
>WENV180804552
ODJG01005463
[ODJG] human metagenome; G_DNA_Supragingival plaque
2446
2374
-
Gln
CTG
[ENA]
¢þ
>WENV180810008
ODJK01089260
[ODJK] human metagenome; G_DNA_Subgingival plaque
220
148
-
Gln
CTG
[ENA]
¢þ
>WENV180813658
ODJO01001633
[ODJO] human metagenome; G_DNA_Supragingival plaque
7198
7270
+
Gln
CTG
[ENA]
¢þ
>WENV180814027
ODJO01005384
[ODJO] human metagenome; G_DNA_Supragingival plaque
5246
5172
-
Gln
CTG
[ENA]
¢þ
>WENV180823277
ODJW01014167
[ODJW] human metagenome; G_DNA_Supragingival plaque
1133
1205
+
Gln
CTG
[ENA]
¢þ
>WENV180824487
ODJX01010264
[ODJX] human metagenome; G_DNA_Supragingival plaque
1306
1378
+
Gln
CTG
[ENA]
¢þ
>WENV180824759
ODJX01044789
[ODJX] human metagenome; G_DNA_Supragingival plaque
126
198
+
Gln
CTG
[ENA]
¢þ
>WENV180833267
ODKC01023673
[ODKC] human metagenome; G_DNA_Supragingival plaque
718
790
+
Gln
CTG
[ENA]
¢þ
>WENV180833874
ODKD01000598
[ODKD] human metagenome; G_DNA_Supragingival plaque
13440
13514
+
Gln
CTG
[ENA]
¢þ
>WENV180834305
ODKD01010480
[ODKD] human metagenome; G_DNA_Supragingival plaque
1216
1288
+
Gln
CTG
[ENA]
¢þ
>WENV180835665
ODKE01007655
[ODKE] human metagenome; G_DNA_Supragingival plaque
179
251
+
Gln
CTG
[ENA]
¢þ
>WENV180843635
ODKN01006616
[ODKN] human metagenome; G_DNA_Supragingival plaque
530
602
+
Gln
CTG
[ENA]
¢þ
>WENV180843688
ODKN01008042
[ODKN] human metagenome; G_DNA_Supragingival plaque
949
1023
+
Gln
CTG
[ENA]
¢þ
>WENV180846201
ODKT01006892
[ODKT] human metagenome; G_DNA_Supragingival plaque
2783
2855
+
Gln
CTG
[ENA]
¢þ
>WENV180847877
ODKT01227113
[ODKT] human metagenome; G_DNA_Supragingival plaque
292
220
-
Gln
CTG
[ENA]
¢þ
>WENV180860115
ODLD01020211
[ODLD] human metagenome; G_DNA_Supragingival plaque
1167
1239
+
Gln
CTG
[ENA]
¢þ
>WENV180868539
ODLL01032183
[ODLL] human metagenome; G_DNA_Buccal mucosa
135
61
-
Gln
CTG
[ENA]
¢þ
>WENV180888820
ODMN01004113
[ODMN] human metagenome; G_DNA_Supragingival plaque
3972
3898
-
Gln
CTG
[ENA]
¢þ
>WENV180889115
ODMN01013186
[ODMN] human metagenome; G_DNA_Supragingival plaque
320
248
-
Gln
CTG
[ENA]
¢þ
>WENV180889378
ODMN01036275
[ODMN] human metagenome; G_DNA_Supragingival plaque
590
662
+
Gln
CTG
[ENA]
¢þ
>WENV180889769
ODMN01135076
[ODMN] human metagenome; G_DNA_Supragingival plaque
316
244
-
Gln
CTG
[ENA]
¢þ
>WENV180933998
ODTR01010691
[ODTR] human metagenome; G_DNA_Supragingival plaque
245
173
-
Gln
CTG
[ENA]
¢þ
>WENV180934602
ODTS01000678
[ODTS] human metagenome; G_DNA_Subgingival plaque
5773
5701
-
Gln
CTG
[ENA]
¢þ
>WENV180944745
ODUC01032923
[ODUC] human metagenome; G_DNA_Supragingival plaque
1404
1476
+
Gln
CTG
[ENA]
¢þ
>WENV180945635
ODUC01291054
[ODUC] human metagenome; G_DNA_Supragingival plaque
5
77
+
Gln
CTG
[ENA]
¢þ
>WENV180958156
ODUL01000784
[ODUL] human metagenome; G_DNA_Supragingival plaque
3178
3106
-
Gln
CTG
[ENA]
¢þ
>WENV180958635
ODUL01015432
[ODUL] human metagenome; G_DNA_Supragingival plaque
311
385
+
Gln
CTG
[ENA]
¢þ
>WENV180981738
ODVE01052164
[ODVE] human metagenome; G_DNA_Supragingival plaque
77
5
-
Gln
CTG
[ENA]
¢þ
>WENV180982017
ODVE01118306
[ODVE] human metagenome; G_DNA_Supragingival plaque
118
190
+
Gln
CTG
[ENA]
¢þ
>WENV180983098
ODVF01003504
[ODVF] human metagenome; G_DNA_Supragingival plaque
1512
1584
+
Gln
CTG
[ENA]
¢þ
>WENV180984149
ODVF01130600
[ODVF] human metagenome; G_DNA_Supragingival plaque
334
262
-
Gln
CTG
[ENA]
¢þ
>WENV180984253
ODVF01215776
[ODVF] human metagenome; G_DNA_Supragingival plaque
215
143
-
Gln
CTG
[ENA]
¢þ
>WENV181002632
ODVX01000944
[ODVX] human metagenome; G_DNA_Supragingival plaque
15061
15135
+
Gln
CTG
[ENA]
¢þ
>WENV181004054
ODVX01080756
[ODVX] human metagenome; G_DNA_Supragingival plaque
1
73
+
Gln
CTG
[ENA]
¢þ
>WENV181008380
ODWE01004563
[ODWE] human metagenome; G_DNA_Supragingival plaque
1085
1159
+
Gln
CTG
[ENA]
¢þ
>WENV181008572
ODWE01007745
[ODWE] human metagenome; G_DNA_Supragingival plaque
3047
2975
-
Gln
CTG
[ENA]
¢þ
>WENV181019553
ODWU01005784
[ODWU] human metagenome; G_DNA_Supragingival plaque
3287
3213
-
Gln
CTG
[ENA]
¢þ
>WENV181020127
ODWU01059818
[ODWU] human metagenome; G_DNA_Supragingival plaque
219
147
-
Gln
CTG
[ENA]
¢þ
>WENV181049761
ODYD01002046
[ODYD] human metagenome; G_DNA_Supragingival plaque
8050
8122
+
Gln
CTG
[ENA]
¢þ
>WENV181050411
ODYD01017773
[ODYD] human metagenome; G_DNA_Supragingival plaque
1617
1689
+
Gln
CTG
[ENA]
¢þ
>WENV181050567
ODYD01027062
[ODYD] human metagenome; G_DNA_Supragingival plaque
234
162
-
Gln
CTG
[ENA]
¢þ
>WENV181063094
ODYP01000063
[ODYP] human metagenome; G_DNA_Supragingival plaque
11044
10972
-
Gln
CTG
[ENA]
¢þ
>WENV181063533
ODYP01001333
[ODYP] human metagenome; G_DNA_Supragingival plaque
7694
7768
+
Gln
CTG
[ENA]
¢þ
>WENV181064354
ODYP01022516
[ODYP] human metagenome; G_DNA_Supragingival plaque
1320
1392
+
Gln
CTG
[ENA]
¢þ
>WENV181070676
OEAE01005665
[OEAE] human metagenome; G_DNA_Supragingival plaque
1062
1136
+
Gln
CTG
[ENA]
¢þ
>WENV181076895
OEAP01017012
[OEAP] human metagenome; G_DNA_Supragingival plaque
306
380
+
Gln
CTG
[ENA]
¢þ
>WENV181077190
OEAP01031532
[OEAP] human metagenome; G_DNA_Supragingival plaque
1160
1232
+
Gln
CTG
[ENA]
¢þ
>WENV181080024
OEAS01023584
[OEAS] human metagenome; G_DNA_Supragingival plaque
2508
2436
-
Gln
CTG
[ENA]
¢þ
>WENV181082579
OEAV01000097
[OEAV] human metagenome; G_DNA_Supragingival plaque
50157
50231
+
Gln
CTG
[ENA]
¢þ
>WENV181082890
OEAV01001095
[OEAV] human metagenome; G_DNA_Supragingival plaque
8051
8123
+
Gln
CTG
[ENA]
¢þ
>WENV181121989
OEFL01042356
[OEFL] human metagenome; G_DNA_Supragingival plaque
349
277
-
Gln
CTG
[ENA]
¢þ
>WENV181136663
OEGI01024147
[OEGI] human metagenome; G_DNA_Supragingival plaque
607
535
-
Gln
CTG
[ENA]
¢þ
>WENV181137955
OEGJ01054462
[OEGJ] human metagenome; G_DNA_Supragingival plaque
340
412
+
Gln
CTG
[ENA]
¢þ
>WENV181143795
OEHM01010773
[OEHM] human metagenome; G_DNA_Supragingival plaque
356
284
-
Gln
CTG
[ENA]
¢þ
>WENV181143799
OEHM01011145
[OEHM] human metagenome; G_DNA_Supragingival plaque
297
371
+
Gln
CTG
[ENA]
¢þ
>WENV181152836
OEIA01007884
[OEIA] human metagenome; G_DNA_Supragingival plaque
336
408
+
Gln
CTG
[ENA]
¢þ
>WENV181153434
OEIA01077665
[OEIA] human metagenome; G_DNA_Supragingival plaque
229
157
-
Gln
CTG
[ENA]
¢þ
>WENV181160386
OEIK01007284
[OEIK] human metagenome; G_DNA_Supragingival plaque
2213
2139
-
Gln
CTG
[ENA]
¢þ
>WENV181161028
OEIK01098389
[OEIK] human metagenome; G_DNA_Supragingival plaque
195
267
+
Gln
CTG
[ENA]
¢þ
>WENV181178005
OEJS01040468
[OEJS] human metagenome; G_DNA_Supragingival plaque
272
200
-
Gln
CTG
[ENA]
¢þ
>WENV181178320
OEJS01167403
[OEJS] human metagenome; G_DNA_Supragingival plaque
73
147
+
Gln
CTG
[ENA]
¢þ
>WENV181182096
OEJV01002235
[OEJV] human metagenome; G_DNA_Supragingival plaque
5753
5681
-
Gln
CTG
[ENA]
¢þ
>WENV181182789
OEJV01047788
[OEJV] human metagenome; G_DNA_Supragingival plaque
582
508
-
Gln
CTG
[ENA]
¢þ
>W141206205
AZLV01001102
Actinomycetota
Actinomyces urogenitalis DORA_12 [AZLV]
356
430
+
Gln
CTG
[ENA]
¡û
>WENV182636489
OJKZ01009544
[OJKZ] metagenome; surface
1046
1118
+
Gln
CTG
[ENA]
¢þ
>WENV182822893
OKBP01000026
[OKBP] human gut metagenome; human gut
15352
15280
-
Gln
CTG
[ENA]
¢þ
>WENV182845980
OKJI01000095
[OKJI] human gut metagenome; human gut
218
146
-
Gln
CTG
[ENA]
¢þ
>WENV182855010
OKMX01000850
[OKMX] human gut metagenome; human gut
2679
2751
+
Gln
CTG
[ENA]
¢þ
>WENV183510090
OMHL01009509
[OMHL] human oral metagenome; human oral
248
320
+
Gln
CTG
[ENA]
¢þ
>WENV183510334
OMHN01006655
[OMHN] human oral metagenome; human oral
124
196
+
Gln
CTG
[ENA]
¢þ
>WENV183510835
OMHS01002349
[OMHS] human oral metagenome; human oral
566
494
-
Gln
CTG
[ENA]
¢þ
>WENV183510945
OMHT01004903
[OMHT] human oral metagenome; human oral
547
475
-
Gln
CTG
[ENA]
¢þ
>WENV183511243
OMIB01003608
[OMIB] human oral metagenome; human oral
367
439
+
Gln
CTG
[ENA]
¢þ
>C181148282
CP027236
Actinomycetota
Actinomyces sp. oral taxon 897 F0631 [CP027236]
1227119
1227047
-
Gln
CTG
-
¡û
>C181160815
CP027862
Actinomycetota
Actinomyces sp. Z16 [CP027862]
2505253
2505180
-
Gln
CTG
-
¡û
>C191030395
CP025228
Actinomycetota
Actinomyces qiguomingii 410 [CP025228]
2602680
2602607
-
Gln
CTG
-
¡û
>C191208241
LR134350
Actinomycetota
Actinomyces howellii NCTC11636 [LR134350]
43560
43632
+
Gln
CTG
-
¡û
>W141779283
JONS01000008
Actinomycetota
Actinomyces israelii DSM 43320 [JONS]
61236
61308
+
Gln
CTG
[ENA]
¡û
>W1910340108
FTLO01000027
Actinomycetota
Actinotignum timonense type strain: Marseille-P2803 [FTLO]
61692
61620
-
Gln
CTG
[ENA]
¡û
>W1911653698
QDIE01000022
Actinomycetota
Actinotignum sanguinis DSM 26039 [QDIE]
466
394
-
Gln
CTG
[ENA]
¡û
>W1810173619
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
786241
786167
-
Gln
CTG
[ENA]
¡û
>W1810192513
PKMD01000001
Actinomycetota
Actinotignum timonense UMB0063 [PKMD]
278455
278383
-
Gln
CTG
[ENA]
¡û
>W1810192559
PKME01000001
Actinomycetota
Actinotignum timonense UMB0086 [PKME]
283165
283093
-
Gln
CTG
[ENA]
¡û
>W1810238743
PPPL01000099
Actinomycetota
Actinomyces qiguomingii 553 [PPPL]
100618
100691
+
Gln
CTG
[ENA]
¡û
>W1810705160
QMIN01000101
Actinomycetota
Actinomyces sp. Z5 [QMIN]
10342
10269
-
Gln
CTG
[ENA]
¡û
>C151037587
CP008802
Actinomycetota
Actinotignum schaalii CCUG 27420 [CP008802]
677498
677424
-
Gln
CTG
[Ensembl]
¡û
>C151095906
CP012590
Actinomycetota
Actinomyces sp. oral taxon 414 F0588 [CP012590]
1051912
1051984
+
Gln
CTG
-
¡û
>W1511444673
JUUL01000002
Actinomycetota
Actinomyces urogenitalis 752_PACI [JUUL]
213
139
-
Gln
CTG
[ENA]
¡û
>C161068933
CP014228
Actinomycetota
Actinomyces radicidentis CCUG 36733 [CP014228]
3026242
3026170
-
Gln
CTG
[Ensembl]
¡û
>W121084629
AKIO01000018
Actinomycetota
Actinomyces massiliensis 4401292 [AKIO]
129043
128971
-
Gln
CTG
[ENA]
¡û
>W1610742571
LMSE01000003
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
284279
284205
-
Gln
CTG
[ENA]
¡û
>W1710523216
FNHU01000003
Actinomycetota
Actinomyces ruminicola [FNHU]
245645
245571
-
Gln
CTG
[ENA]
¡û
>W1710587377
FQYL01000004
Actinomycetota
Actinomyces denticolens [FQYL]
157770
157698
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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