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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45139 (80 seq.)
>W1710810802
LKHV01000001
Gammaproteobacteria
Candidatus Berkiella cookevillensis CC99 [LKHV]
516448
516361
-
Ser
TGA
[ENA]
¡û
>W1710919570
LNXT01000006
Gammaproteobacteria
Legionella birminghamensis [LNXT]
35284
35197
-
Ser
TGA
[ENA]
¡û
>W1710919650
LNXV01000004
Gammaproteobacteria
Legionella brunensis [LNXV]
93265
93178
-
Ser
TGA
[ENA]
¡û
>W1710919773
LNXY01000003
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
291289
291376
+
Ser
TGA
[ENA]
¡û
>W1710919898
LNYB01000028
Gammaproteobacteria
Legionella feeleii [LNYB]
1573
1486
-
Ser
TGA
[ENA]
¡û
>W1710919971
LNYC01000068
Gammaproteobacteria
Legionella geestiana [LNYC]
13805
13892
+
Ser
TGA
[ENA]
¡û
>W1710920055
LNYF01000004
Gammaproteobacteria
Legionella hackeliae [LNYF]
82187
82100
-
Ser
TGA
[ENA]
¡û
>W1710920105
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
243937
244024
+
Ser
TGA
[ENA]
¡û
>W1710920155
LNYH01000100
Gammaproteobacteria
Legionella israelensis [LNYH]
46339
46426
+
Ser
TGA
[ENA]
¡û
>W1710920204
LNYI01000053
Gammaproteobacteria
Legionella lansingensis [LNYI]
86479
86566
+
Ser
TGA
[ENA]
¡û
>W1710920246
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
1030289
1030204
-
Ser
TGA
[ENA]
¡û
>W1710920323
LNYL01000045
Gammaproteobacteria
Legionella maceachernii [LNYL]
179548
179461
-
Ser
TGA
[ENA]
¡û
>W1710920355
LNYM01000010
Gammaproteobacteria
Legionella micdadei [LNYM]
49504
49417
-
Ser
TGA
[ENA]
¡û
>W1710920430
LNYO01000013
Gammaproteobacteria
Legionella nautarum [LNYO]
427050
426963
-
Ser
TGA
[ENA]
¡û
>W1710920573
LNYS01000006
Gammaproteobacteria
Legionella quinlivanii [LNYS]
314917
315004
+
Ser
TGA
[ENA]
¡û
>W1710920613
LNYT01000003
Gammaproteobacteria
Legionella rubrilucens [LNYT]
97662
97575
-
Ser
TGA
[ENA]
¡û
>W1710921004
LNZC01000027
Gammaproteobacteria
Legionella worsleiensis [LNZC]
32625
32712
+
Ser
TGA
[ENA]
¡û
>W1711252412
LYOZ01000037
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
16286
16373
+
Ser
TGA
[ENA]
¡û
>C171110837
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
1385125
1385038
-
Ser
TGA
-
¡û
>C171110861
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
1838260
1838347
+
Ser
TGA
-
¡û
>W131230558
AUHS01000007
Gammaproteobacteria
Legionella moravica DSM 19234 [AUHS]
42042
41955
-
Ser
TGA
[ENA]
¡û
>WENV180101894
OAOW01049106
[OAOW] marine metagenome; ENVO.00002110
205
291
+
Ser
TGA
[ENA]
¢þ
>W141245604
CALJ01000154
Gammaproteobacteria
Legionella tunisiensis LegM [CALJ]
1024
937
-
Ser
TGA
[ENA]
¡û
>W141273142
CCSB01000004
Gammaproteobacteria
Legionella massiliensis [CCSB]
333355
333268
-
Ser
TGA
[ENA]
¡û
>W141273900
CCVW01000004
Gammaproteobacteria
Legionella massiliensis [CCVW]
333355
333268
-
Ser
TGA
[ENA]
¡û
>WENV170634314
FYBJ01000157
[FYBJ] marine metagenome; marine
1297
1384
+
Ser
TGA
[ENA]
¢þ
>C181019714
CP016397
Gammaproteobacteria
Legionella clemsonensis CDC-D5610 [CP016397]
1801328
1801413
+
Ser
TGA
-
¡û
>C181224597
LT906442
Gammaproteobacteria
Legionella waltersii NCTC13017 [LT906442]
1474248
1474161
-
Ser
TGA
-
¡û
>C181225075
LT906451
Gammaproteobacteria
Legionella lansingensis NCTC12830 [LT906451]
1342094
1342007
-
Ser
TGA
-
¡û
>C191158540
CP038254
Gammaproteobacteria
Legionella israelensis HL-0427-4011 [CP038254]
1329845
1329758
-
Ser
TGA
-
¡û
>C191159060
CP038271
Gammaproteobacteria
Legionella geestiana 1308 [CP038271]
643294
643381
+
Ser
TGA
-
¡û
>C191159118
CP038273
Gammaproteobacteria
Legionella israelensis Bercovier 4 [CP038273]
2998091
2998004
-
Ser
TGA
-
¡û
>C191209300
LR134374
Gammaproteobacteria
Legionella spiritensis NCTC12082 [LR134374]
1012207
1012294
+
Ser
TGA
-
¡û
>C191209828
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
1861369
1861454
+
Ser
TGA
-
¡û
>W141558785
JHWF01000012
Gammaproteobacteria
Legionella lansingensis DSM 19556 = ATCC 49751 [JHWF]
86718
86805
+
Ser
TGA
[ENA]
¡û
>W141561018
JHYC01000005
Gammaproteobacteria
Legionella fairfieldensis ATCC 49588 [JHYC]
115121
115208
+
Ser
TGA
[ENA]
¡û
>W141561525
JHYN01000001
Gammaproteobacteria
Legionella geestiana DSM 21217 [JHYN]
102355
102268
-
Ser
TGA
[ENA]
¡û
>W1910729935
MHBB01000020
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_35_11 [MHBB]
3191
3104
-
Ser
TGA
[ENA]
¡û
>W1910814185
MVJN01000006
Gammaproteobacteria
Legionella quinlivanii ID143958 [MVJN]
213891
213978
+
Ser
TGA
[ENA]
¡û
>W1911662148
QFGE01000003
Gammaproteobacteria
Legionella taurinensis WH04 [QFGE]
245592
245679
+
Ser
TGA
[ENA]
¡û
>W1911662230
QFGG01000003
Gammaproteobacteria
Legionella taurinensis WH02 [QFGG]
245592
245679
+
Ser
TGA
[ENA]
¡û
>W1911662264
QFGH01000004
Gammaproteobacteria
Legionella taurinensis WH01 [QFGH]
111991
112078
+
Ser
TGA
[ENA]
¡û
>W1911662321
QFGI01000006
Gammaproteobacteria
Legionella taurinensis WC04 [QFGI]
81765
81852
+
Ser
TGA
[ENA]
¡û
>W1911662352
QFGJ01000006
Gammaproteobacteria
Legionella taurinensis WC03 [QFGJ]
81765
81852
+
Ser
TGA
[ENA]
¡û
>W1911662405
QFGK01000007
Gammaproteobacteria
Legionella taurinensis WC02 [QFGK]
81765
81852
+
Ser
TGA
[ENA]
¡û
>W1911662444
QFGL01000006
Gammaproteobacteria
Legionella taurinensis WC01 [QFGL]
81765
81852
+
Ser
TGA
[ENA]
¡û
>W1810531350
QCXK01000004
Gammaproteobacteria
Legionella taurinensis Genessee01 [QCXK]
111991
112078
+
Ser
TGA
[ENA]
¡û
>WENV028837
AACY021149718
Marine microbial communities from Global Ocean Sampling (GOS)
788
877
+
Ser
TGA
[ENA]
>C151103418
LN614827
Gammaproteobacteria
Legionella fallonii LLAP-10 [LN614827]
1255508
1255421
-
Ser
TGA
[Ensembl]
¡û
>C151103436
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
2026594
2026681
+
Ser
TGA
[Ensembl]
¡û
>C151103884
LN681225
Gammaproteobacteria
Legionella hackeliae ATCC 35250 [LN681225]
1425752
1425665
-
Ser
TGA
[Ensembl]
¡û
>W1610580130
LBAX01000005
Gammaproteobacteria
Legionella jordanis [LBAX]
198707
198792
+
Ser
TGA
[ENA]
¡û
>W1610583895
LBHK01000017
Gammaproteobacteria
Legionella feeleii [LBHK]
1536
1449
-
Ser
TGA
[ENA]
¡û
>W1610584646
LCUB01000008
Gammaproteobacteria
Legionella micdadei [LCUB]
195696
195783
+
Ser
TGA
[ENA]
¡û
>W1610674857
LKHV01000001
Gammaproteobacteria
Candidatus Berkiella cookevillensis CC99 [LKHV]
516448
516361
-
Ser
TGA
[ENA]
¡û
>W1610777468
LNXT01000006
Gammaproteobacteria
Legionella birminghamensis [LNXT]
35284
35197
-
Ser
TGA
[ENA]
¡û
>W1610777548
LNXV01000004
Gammaproteobacteria
Legionella brunensis [LNXV]
93265
93178
-
Ser
TGA
[ENA]
¡û
>W1610777671
LNXY01000003
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
291289
291376
+
Ser
TGA
[ENA]
¡û
>W1610777796
LNYB01000028
Gammaproteobacteria
Legionella feeleii [LNYB]
1573
1486
-
Ser
TGA
[ENA]
¡û
>W1610777869
LNYC01000068
Gammaproteobacteria
Legionella geestiana [LNYC]
13805
13892
+
Ser
TGA
[ENA]
¡û
>W1610777953
LNYF01000004
Gammaproteobacteria
Legionella hackeliae [LNYF]
82187
82100
-
Ser
TGA
[ENA]
¡û
>W1610778003
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
243937
244024
+
Ser
TGA
[ENA]
¡û
>W1610778053
LNYH01000100
Gammaproteobacteria
Legionella israelensis [LNYH]
46339
46426
+
Ser
TGA
[ENA]
¡û
>W1610778102
LNYI01000053
Gammaproteobacteria
Legionella lansingensis [LNYI]
86479
86566
+
Ser
TGA
[ENA]
¡û
>W1610778144
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
1030289
1030204
-
Ser
TGA
[ENA]
¡û
>W1610778221
LNYL01000045
Gammaproteobacteria
Legionella maceachernii [LNYL]
179548
179461
-
Ser
TGA
[ENA]
¡û
>W1610778253
LNYM01000010
Gammaproteobacteria
Legionella micdadei [LNYM]
49504
49417
-
Ser
TGA
[ENA]
¡û
>W1610778328
LNYO01000013
Gammaproteobacteria
Legionella nautarum [LNYO]
427050
426963
-
Ser
TGA
[ENA]
¡û
>W1610778471
LNYS01000006
Gammaproteobacteria
Legionella quinlivanii [LNYS]
314917
315004
+
Ser
TGA
[ENA]
¡û
>W1610778511
LNYT01000003
Gammaproteobacteria
Legionella rubrilucens [LNYT]
97662
97575
-
Ser
TGA
[ENA]
¡û
>W1610778902
LNZC01000027
Gammaproteobacteria
Legionella worsleiensis [LNZC]
32625
32712
+
Ser
TGA
[ENA]
¡û
>W1611017200
LYOZ01000037
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
16286
16373
+
Ser
TGA
[ENA]
¡û
>W1710507452
FMVH01000006
Gammaproteobacteria
Legionella israelensis DSM 19235 [FMVH]
27971
27884
-
Ser
TGA
[ENA]
¡û
>W1710507767
FMVN01000006
Gammaproteobacteria
Legionella micdadei [FMVN]
195999
196086
+
Ser
TGA
[ENA]
¡û
>W1710539366
FNVH01000002
Gammaproteobacteria
Legionella quinlivanii DSM 21216 [FNVH]
203198
203285
+
Ser
TGA
[ENA]
¡û
>W1710568966
FOTZ01000005
Gammaproteobacteria
Legionella jamestowniensis DSM 19215 [FOTZ]
300208
300121
-
Ser
TGA
[ENA]
¡û
>W1710601524
FUXJ01000005
Gammaproteobacteria
Legionella maceachernii [FUXJ]
79447
79360
-
Ser
TGA
[ENA]
¡û
>W1710699142
LBAX01000005
Gammaproteobacteria
Legionella jordanis [LBAX]
198707
198792
+
Ser
TGA
[ENA]
¡û
>W1710703043
LBHK01000017
Gammaproteobacteria
Legionella feeleii [LBHK]
1536
1449
-
Ser
TGA
[ENA]
¡û
>W1710703837
LCUB01000008
Gammaproteobacteria
Legionella micdadei [LCUB]
195696
195783
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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