This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451461 (30 seq.)
>WENV181453500
OGEB01022194
[OGEB] metagenome; Human gut stool
12
87
+
Lys
TTT
[ENA]
¢þ
>WENV181457829
OGEI01028365
[OGEI] metagenome; Human gut stool
522
447
-
Lys
TTT
[ENA]
¢þ
>WENV181459385
OGEK01033379
[OGEK] metagenome; Human gut stool
164
89
-
Lys
TTT
[ENA]
¢þ
>WENV181474142
OGFC01002198
[OGFC] metagenome; Human gut stool
8802
8727
-
Lys
TTT
[ENA]
¢þ
>WENV181560465
OGJC01000269
[OGJC] metagenome; Human gut stool
39326
39401
+
Lys
TTT
[ENA]
¢þ
>WENV181561431
OGJD01002385
[OGJD] metagenome; Human gut stool
6321
6246
-
Lys
TTT
[ENA]
¢þ
>WENV181569579
OGJL01012281
[OGJL] metagenome; Human gut stool
705
630
-
Lys
TTT
[ENA]
¢þ
>WENV181573593
OGJR01022628
[OGJR] metagenome; Human gut stool
504
579
+
Lys
TTT
[ENA]
¢þ
>WENV181900531
OGXV01015551
[OGXV] human gut metagenome; faeces
2048
1973
-
Lys
TTT
[ENA]
¢þ
>WENV181948003
OGZE01000162
[OGZE] human gut metagenome; faeces
30419
30494
+
Lys
TTT
[ENA]
¢þ
>WENV181986831
OHAM01004846
[OHAM] human gut metagenome; faeces
5779
5704
-
Lys
TTT
[ENA]
¢þ
>WENV181994065
OHAS01009813
[OHAS] human gut metagenome; faeces
4017
3942
-
Lys
TTT
[ENA]
¢þ
>WENV182002859
OHBA01022180
[OHBA] human gut metagenome; feces
466
391
-
Lys
TTT
[ENA]
¢þ
>WENV182015758
OHBR01023524
[OHBR] human gut metagenome; feces
836
761
-
Lys
TTT
[ENA]
¢þ
>WENV182138399
OHKN01004326
[OHKN] human gut metagenome; feces
3232
3157
-
Lys
TTT
[ENA]
¢þ
>WENV182866754
OKRR01001161
[OKRR] human gut metagenome; faeces
21835
21910
+
Lys
TTT
[ENA]
¢þ
>WENV183290280
OLSH01000086
[OLSH] human gut metagenome; faeces
64452
64527
+
Lys
TTT
[ENA]
¢þ
>C181003895
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
175610
175685
+
Lys
TTT
-
¡û
>C181161020
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
924889
924814
-
Lys
TTT
-
¡û
>C181161078
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
1223071
1222996
-
Lys
TTT
-
¡û
>C181216774
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3211129
3211054
-
Lys
TTT
-
¡û
>C191210221
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
3205405
3205480
+
Lys
TTT
-
¡û
>C191219283
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3066962
3066887
-
Lys
TTT
-
¡û
>W09118807
ACDH01000075
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
63116
63191
+
Lys
TTT
[ENA]
¡û
>W09125177
ACIE01000037
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
43443
43518
+
Lys
TTT
[ENA]
¡û
>W1810791349
QRIG01000012
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
26637
26712
+
Lys
TTT
[ENA]
¡û
>W1810818386
QSDE01000011
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
34869
34794
-
Lys
TTT
[ENA]
¡û
>W1810832230
QSOW01000019
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
21122
21047
-
Lys
TTT
[ENA]
¡û
>W121021771
AGWJ01000062
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
35368
35293
-
Lys
TTT
[ENA]
¡û
>WENV085119
BABB01004899
Gut microbiome of Human (healthy human sample In-A, Adult, Male)
1560
1483
-
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK