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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451616 (34 seq.)
>W1710987369
LPUO01000045
Gammaproteobacteria
Aeromonas schubertii [LPUO]
69752
69677
-
Asn
GTT
[ENA]
¡û
>W1710987384
LPUO01000057
Gammaproteobacteria
Aeromonas schubertii [LPUO]
101606
101681
+
Asn
GTT
[ENA]
¡û
>W131124561
APVG01000007
Gammaproteobacteria
Aeromonas diversa 2478-85 [APVG]
1463
1388
-
Asn
GTT
[ENA]
¡û
>W131124568
APVG01000014
Gammaproteobacteria
Aeromonas diversa 2478-85 [APVG]
33959
33884
-
Asn
GTT
[ENA]
¡û
>WENV180006382
FLRY01022923
[FLRY] metagenome; saliva
67
142
+
Asn
GTT
[ENA]
¢þ
>W141234173
BAWK01000067
Gammaproteobacteria
Aeromonas taiwanensis [BAWK]
2026
2101
+
Asn
GTT
[ENA]
¡û
>W141234180
BAWK01000076
Gammaproteobacteria
Aeromonas taiwanensis [BAWK]
90456
90531
+
Asn
GTT
[ENA]
¡û
>WENV170657793
JTFP01020335
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
231
306
+
Asn
GTT
[ENA]
¢þ
>WENV170657937
JTFP01036084
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1378
1303
-
Asn
GTT
[ENA]
¢þ
>WENV170658418
JTFP01108944
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
749
824
+
Asn
GTT
[ENA]
¢þ
>C191170461
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
625074
625149
+
Asn
GTT
-
¡û
>C191170491
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3882150
3882225
+
Asn
GTT
-
¡û
>C191177403
CP040428
Gammaproteobacteria
Jejubacter calystegiae KSNA2 [CP040428]
4532221
4532296
+
Asn
GTT
-
¡û
>W1911705605
QORJ01000004
Gammaproteobacteria
Aeromonas taiwanensis 186 [QORJ]
37362
37287
-
Asn
GTT
[ENA]
¡û
>W1911705665
QORJ01000050
Gammaproteobacteria
Aeromonas taiwanensis 186 [QORJ]
13166
13241
+
Asn
GTT
[ENA]
¡û
>W1911705695
QORK01000004
Gammaproteobacteria
Aeromonas taiwanensis 198 [QORK]
133619
133694
+
Asn
GTT
[ENA]
¡û
>W1911705751
QORK01000053
Gammaproteobacteria
Aeromonas taiwanensis 198 [QORK]
22949
22874
-
Asn
GTT
[ENA]
¡û
>W1911705781
QORL01000004
Gammaproteobacteria
Aeromonas taiwanensis 1713 [QORL]
133619
133694
+
Asn
GTT
[ENA]
¡û
>W1911705837
QORL01000053
Gammaproteobacteria
Aeromonas taiwanensis 1713 [QORL]
22949
22874
-
Asn
GTT
[ENA]
¡û
>W1510065183
CDBN01000053
Gammaproteobacteria
Aeromonas sanarellii LMG 24682 [CDBN]
116636
116711
+
Asn
GTT
[ENA]
¡û
>W1510065187
CDBN01000065
Gammaproteobacteria
Aeromonas sanarellii LMG 24682 [CDBN]
12571
12646
+
Asn
GTT
[ENA]
¡û
>W1510066055
CDBY01000012
Gammaproteobacteria
Aeromonas simiae CIP 107798 [CDBY]
8279
8204
-
Asn
GTT
[ENA]
¡û
>W1510066131
CDBY01000085
Gammaproteobacteria
Aeromonas simiae CIP 107798 [CDBY]
58384
58459
+
Asn
GTT
[ENA]
¡û
>W1510066477
CDCE01000007
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
33957
33882
-
Asn
GTT
[ENA]
¡û
>W1510066537
CDCE01000031
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
150347
150422
+
Asn
GTT
[ENA]
¡û
>W1510067543
CDDB01000074
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
54113
54188
+
Asn
GTT
[ENA]
¡û
>W1510067558
CDDB01000081
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
33920
33995
+
Asn
GTT
[ENA]
¡û
>W1510067689
CDDD01000030
Gammaproteobacteria
Aeromonas taiwanensis LMG 24683 [CDDD]
25680
25605
-
Asn
GTT
[ENA]
¡û
>W1510067701
CDDD01000042
Gammaproteobacteria
Aeromonas taiwanensis LMG 24683 [CDDD]
48970
49045
+
Asn
GTT
[ENA]
¡û
>C161050666
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
613605
613680
+
Asn
GTT
[Ensembl]
¡û
>C161050700
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
3908786
3908861
+
Asn
GTT
[Ensembl]
¡û
>W1610842313
LPUO01000045
Gammaproteobacteria
Aeromonas schubertii [LPUO]
69752
69677
-
Asn
GTT
[ENA]
¡û
>W1610842328
LPUO01000057
Gammaproteobacteria
Aeromonas schubertii [LPUO]
101606
101681
+
Asn
GTT
[ENA]
¡û
>W1710596146
FTMJ01000015
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
90188
90263
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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