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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45178 (102 seq.)
>W1710853047
LLWH01000069
Gammaproteobacteria
Pseudomonas endophytica [LLWH]
5981
6068
+
Ser
TGA
[ENA]
¡û
>W1711314487
MAUK01000009
Gammaproteobacteria
Pseudomonas protegens [MAUK]
399093
399006
-
Ser
TGA
[ENA]
¡û
>W1711314539
MAUL01000003
Gammaproteobacteria
Pseudomonas protegens [MAUL]
414732
414645
-
Ser
TGA
[ENA]
¡û
>W1711350803
MCRS01000184
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BAC [MCRS]
437
350
-
Ser
TGA
[ENA]
¡û
>W1711350835
MCRT01000115
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BDMA [MCRT]
8812
8899
+
Ser
TGA
[ENA]
¡û
>W1711350891
MCRU01000232
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BD [MCRU]
14691
14778
+
Ser
TGA
[ENA]
¡û
>W1711350909
MCRV01000091
Gammaproteobacteria
Pseudomonas sp. BIOMIG1N [MCRV]
197450
197537
+
Ser
TGA
[ENA]
¡û
>W1711511887
MLCT01000034
Gammaproteobacteria
Pseudomonas sp. BS-2016 [MLCT]
3072
2985
-
Ser
TGA
[ENA]
¡û
>W1711678193
MRTZ01000018
Gammaproteobacteria
Pseudomonas protegens [MRTZ]
402610
402523
-
Ser
TGA
[ENA]
¡û
>W1711678232
MRUA01000009
Gammaproteobacteria
Pseudomonas protegens [MRUA]
76855
76942
+
Ser
TGA
[ENA]
¡û
>W1711678290
MRUB01000009
Gammaproteobacteria
Pseudomonas protegens [MRUB]
901408
901495
+
Ser
TGA
[ENA]
¡û
>W1711678341
MRUC01000003
Gammaproteobacteria
Pseudomonas protegens [MRUC]
358838
358751
-
Ser
TGA
[ENA]
¡û
>W1712006139
NEHY01000012
Gammaproteobacteria
Pseudomonas sp. R26(2017) [NEHY]
4017
3930
-
Ser
TGA
[ENA]
¡û
>W1712007250
NEIQ01000013
Gammaproteobacteria
Pseudomonas sp. B6(2017) [NEIQ]
4017
3930
-
Ser
TGA
[ENA]
¡û
>C171021396
CP013184
Gammaproteobacteria
Pseudomonas protegens H78 [CP013184]
4503958
4504045
+
Ser
TGA
-
¡û
>C171065953
CP017687
Gammaproteobacteria
Pseudomonas lundensis AU1044 [CP017687]
4111616
4111703
+
Ser
TGA
-
¡û
>C016304
CP000076
Gammaproteobacteria
Pseudomonas protegens Pf-5 [CP000076]
4338335
4338422
+
Ser
TGA
[Ensembl]
¡û
>W141188592
AYMU01000001
Gammaproteobacteria
Pseudomonas sp. PH1b [AYMU]
485496
485409
-
Ser
TGA
[ENA]
¡û
>WENV170784464
MCND01000227
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
22354
22441
+
Ser
TGA
[ENA]
¢þ
>WENV170784545
MCNE01000228
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
437
350
-
Ser
TGA
[ENA]
¢þ
>WENV170784645
MCNF01000355
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
8600
8687
+
Ser
TGA
[ENA]
¢þ
>WENV170784749
MCNG01000802
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
437
350
-
Ser
TGA
[ENA]
¢þ
>C181057827
CP022097
Gammaproteobacteria
Pseudomonas protegens FDAARGOS_307 [CP022097]
4513648
4513561
-
Ser
TGA
-
¡û
>C181199940
CP031396
Gammaproteobacteria
Pseudomonas protegens FD6 [CP031396]
1049550
1049637
+
Ser
TGA
-
¡û
>C191051799
CP027705
Gammaproteobacteria
Pseudomonas sp. CMR5c [CP027705]
4293867
4293954
+
Ser
TGA
-
¡û
>C191051886
CP027706
Gammaproteobacteria
Pseudomonas sessilinigenes CMR12a [CP027706]
6170641
6170728
+
Ser
TGA
-
¡û
>C191226133
LS999205
Gammaproteobacteria
Pseudomonas protegens CHA0 [LS999205]
4270220
4270307
+
Ser
TGA
-
¡û
>W1910184369
BJOO01000014
Gammaproteobacteria
Pseudomonas fluorescens NBRC 15842 [BJOO]
78716
78803
+
Ser
TGA
[ENA]
¡û
>W1910644792
LUUD01000034
Gammaproteobacteria
Pseudomonas protegens 4 [LUUD]
265836
265749
-
Ser
TGA
[ENA]
¡û
>W1910644831
LUUE01000080
Gammaproteobacteria
Pseudomonas protegens 11 [LUUE]
313020
313107
+
Ser
TGA
[ENA]
¡û
>W1910766084
MOAK01000066
Gammaproteobacteria
Pseudomonas protegens 14B2 [MOAK]
27715
27628
-
Ser
TGA
[ENA]
¡û
>W1910766145
MOAL01000006
Gammaproteobacteria
Pseudomonas chlororaphis 14D6 [MOAL]
610099
610012
-
Ser
TGA
[ENA]
¡û
>W1910766352
MOAP01000007
Gammaproteobacteria
Pseudomonas protegens 12H11 [MOAP]
158647
158734
+
Ser
TGA
[ENA]
¡û
>W1910766418
MOAQ01000069
Gammaproteobacteria
Pseudomonas protegens 15G2 [MOAQ]
27745
27832
+
Ser
TGA
[ENA]
¡û
>W1910766484
MOAR01000014
Gammaproteobacteria
Pseudomonas protegens 15H3 [MOAR]
545667
545754
+
Ser
TGA
[ENA]
¡û
>W1910766517
MOAS01000006
Gammaproteobacteria
Pseudomonas protegens 38G2 [MOAS]
545142
545229
+
Ser
TGA
[ENA]
¡û
>W1910766605
MOAT01000017
Gammaproteobacteria
Pseudomonas protegens 1C5 [MOAT]
1240449
1240536
+
Ser
TGA
[ENA]
¡û
>W1910766611
MOAU01000002
Gammaproteobacteria
Pseudomonas protegens 1B1 [MOAU]
195223
195310
+
Ser
TGA
[ENA]
¡û
>W1910766700
MOAV01000001
Gammaproteobacteria
Pseudomonas protegens Wayne [MOAV]
430875
430788
-
Ser
TGA
[ENA]
¡û
>W1910766780
MOAW01000003
Gammaproteobacteria
Pseudomonas protegens Clinton [MOAW]
430541
430454
-
Ser
TGA
[ENA]
¡û
>W1910766812
MOAX01000003
Gammaproteobacteria
Pseudomonas protegens Darke [MOAX]
7016
6929
-
Ser
TGA
[ENA]
¡û
>W1911175633
NQKE01000003
Gammaproteobacteria
Pseudomonas lundensis L1819 [NQKE]
210923
211010
+
Ser
TGA
[ENA]
¡û
>W1911175769
NQKG01000005
Gammaproteobacteria
Pseudomonas lundensis L1814 [NQKG]
210923
211010
+
Ser
TGA
[ENA]
¡û
>W1911176101
NQKL01000005
Gammaproteobacteria
Pseudomonas fragi F1820 [NQKL]
84715
84628
-
Ser
TGA
[ENA]
¡û
>W1911176498
NQKQ01000029
Gammaproteobacteria
Pseudomonas fragi F1801 [NQKQ]
1904
1817
-
Ser
TGA
[ENA]
¡û
>W1911586321
PIZE01000002
Gammaproteobacteria
Pseudomonas protegens XY2F4 [PIZE]
705996
706083
+
Ser
TGA
[ENA]
¡û
>W1911636156
PVUD01000001
Gammaproteobacteria
Pseudomonas sp. NFPP22 [PVUD]
1719685
1719772
+
Ser
TGA
[ENA]
¡û
>W1911681657
QJUO01000010
Gammaproteobacteria
Stutzerimonas kirkiae P4C [QJUO]
3374
3287
-
Ser
TGA
[ENA]
¡û
>W1911681719
QJUP01000014
Gammaproteobacteria
Stutzerimonas kirkiae P17C [QJUP]
115561
115648
+
Ser
TGA
[ENA]
¡û
>W1911681753
QJUQ01000012
Gammaproteobacteria
Stutzerimonas kirkiae P28C [QJUQ]
117122
117209
+
Ser
TGA
[ENA]
¡û
>W1911681815
QJUR01000011
Gammaproteobacteria
Stutzerimonas kirkiae P30C [QJUR]
30701
30614
-
Ser
TGA
[ENA]
¡û
>W1810234194
PPEF01000023
Gammaproteobacteria
Pseudomonas protegens AS15 [PPEF]
51136
51049
-
Ser
TGA
[ENA]
¡û
>W1810239089
PPSC01000051
Gammaproteobacteria
Pseudomonas sp. FW507-12TSA [PPSC]
11130
11043
-
Ser
TGA
[ENA]
¡û
>W1810239410
PPSI01000023
Gammaproteobacteria
Pseudomonas protegens GW456-12-1-14-LB1 [PPSI]
57243
57156
-
Ser
TGA
[ENA]
¡û
>W1810249904
PQCH02000004
Gammaproteobacteria
Pseudomonas sp. MWU12-2534b [PQCH]
497015
497102
+
Ser
TGA
[ENA]
¡û
>W1810403604
PYJM01000005
Gammaproteobacteria
Pseudomonas protegens BNJ-SS-45 [PYJM]
557117
557204
+
Ser
TGA
[ENA]
¡û
>W1810669985
QJRM01000008
Gammaproteobacteria
Pseudomonas protegens MB-090714 [QJRM]
17907
17994
+
Ser
TGA
[ENA]
¡û
>W1810670064
QJRN01000013
Gammaproteobacteria
Pseudomonas protegens MB-090624 [QJRN]
17890
17977
+
Ser
TGA
[ENA]
¡û
>W1810675671
QKLL01000006
Gammaproteobacteria
Pseudomonas sp. TKO30 [QKLL]
100129
100216
+
Ser
TGA
[ENA]
¡û
>W1810675733
QKLM01000006
Gammaproteobacteria
Pseudomonas sp. TKO29 [QKLM]
100129
100216
+
Ser
TGA
[ENA]
¡û
>W1810675795
QKLN01000006
Gammaproteobacteria
Pseudomonas sp. TKO26 [QKLN]
100129
100216
+
Ser
TGA
[ENA]
¡û
>W1810675857
QKLO01000006
Gammaproteobacteria
Pseudomonas sp. TKO14 [QKLO]
100129
100216
+
Ser
TGA
[ENA]
¡û
>C151001779
AP014522
Gammaproteobacteria
Pseudomonas protegens Cab57 [AP014522]
4318303
4318390
+
Ser
TGA
[Ensembl]
¡û
>W1511531160
JYLD01000011
Gammaproteobacteria
Pseudomonas helleri DSM 29165 [JYLD]
13149
13062
-
Ser
TGA
[ENA]
¡û
>W1511531231
JYLE01000062
Gammaproteobacteria
Pseudomonas helleri DSM 28141 [JYLE]
2618
2531
-
Ser
TGA
[ENA]
¡û
>W1511624931
LCYR01000010
Gammaproteobacteria
Pseudomonas fluorescens AU1044 [LCYR]
365841
365754
-
Ser
TGA
[ENA]
¡û
>W1511625052
LCYT01000017
Gammaproteobacteria
Pseudomonas lundensis AU7350 [LCYT]
232933
232846
-
Ser
TGA
[ENA]
¡û
>W1511625112
LCYU01000015
Gammaproteobacteria
Pseudomonas lundensis AU10414 [LCYU]
99234
99147
-
Ser
TGA
[ENA]
¡û
>W1511625158
LCYV01000018
Gammaproteobacteria
Pseudomonas lundensis AU11122 [LCYV]
268986
268899
-
Ser
TGA
[ENA]
¡û
>W1511625221
LCYW01000015
Gammaproteobacteria
Pseudomonas lundensis AU11164 [LCYW]
268947
268860
-
Ser
TGA
[ENA]
¡û
>W1511625281
LCYX01000014
Gammaproteobacteria
Pseudomonas lundensis AU11235 [LCYX]
253413
253326
-
Ser
TGA
[ENA]
¡û
>W1511625342
LCYY01000017
Gammaproteobacteria
Pseudomonas lundensis AU11136 [LCYY]
253437
253350
-
Ser
TGA
[ENA]
¡û
>W1511625454
LCZA01000020
Gammaproteobacteria
Pseudomonas lundensis AU12644 [LCZA]
360780
360693
-
Ser
TGA
[ENA]
¡û
>W1511625530
LCZB01000051
Gammaproteobacteria
Pseudomonas fluorescens AU11706 [LCZB]
250067
250154
+
Ser
TGA
[ENA]
¡û
>W1511625589
LCZC01000016
Gammaproteobacteria
Pseudomonas protegens AU13852 [LCZC]
233050
233137
+
Ser
TGA
[ENA]
¡û
>W1511633104
LDET01000029
Gammaproteobacteria
Pseudomonas protegens AU20219 [LDET]
231183
231270
+
Ser
TGA
[ENA]
¡û
>W11187012
CADW01000150
Gammaproteobacteria
Pseudomonas fluorescens Wayne1 [CADW]
2266
2179
-
Ser
TGA
[ENA]
¡û
>W11187087
CADX01000078
Gammaproteobacteria
Pseudomonas fluorescens Wayne1 [CADX]
60552
60639
+
Ser
TGA
[ENA]
¡û
>C161000519
AP014627
Gammaproteobacteria
Pseudomonas sp. Os17 [AP014627]
4390280
4390367
+
Ser
TGA
[Ensembl]
¡û
>C161000587
AP014628
Gammaproteobacteria
Pseudomonas sp. St29 [AP014628]
4280992
4281079
+
Ser
TGA
-
¡û
>W121070628
AJXF01000068
Gammaproteobacteria
Pseudomonas fluorescens NZI7 [AJXF]
6910
6823
-
Ser
TGA
[ENA]
¡û
>W121111134
ALJC01000006
Gammaproteobacteria
Pseudomonas psychrophila HA-4 [ALJC]
129318
129231
-
Ser
TGA
[ENA]
¡û
>C131002249
CP003190
Gammaproteobacteria
Pseudomonas protegens CHA0 [CP003190]
4269898
4269985
+
Ser
TGA
[Ensembl]
¡û
>W1610670737
LKBM01002454
Gammaproteobacteria
Pseudomonas sp. ABAC61 [LKBM]
1268
1355
+
Ser
TGA
[ENA]
¡û
>W1610716171
LLWH01000069
Gammaproteobacteria
Pseudomonas endophytica [LLWH]
5981
6068
+
Ser
TGA
[ENA]
¡û
>W1611059362
MAUK01000009
Gammaproteobacteria
Pseudomonas protegens [MAUK]
399093
399006
-
Ser
TGA
[ENA]
¡û
>W1611059414
MAUL01000003
Gammaproteobacteria
Pseudomonas protegens [MAUL]
414732
414645
-
Ser
TGA
[ENA]
¡û
>W1710508670
FMWI01000006
Gammaproteobacteria
Pseudomonas sp. NFPP17 [FMWI]
60471
60558
+
Ser
TGA
[ENA]
¡û
>W1710509031
FMWW01000001
Gammaproteobacteria
Pseudomonas sp. NFPP12 [FMWW]
16238
16151
-
Ser
TGA
[ENA]
¡û
>W1710509769
FMXL01000006
Gammaproteobacteria
Pseudomonas sp. NFPP15 [FMXL]
60293
60380
+
Ser
TGA
[ENA]
¡û
>W1710527449
FNLA01000002
Gammaproteobacteria
Pseudomonas lundensis [FNLA]
1793709
1793796
+
Ser
TGA
[ENA]
¡û
>W1710536710
FNTJ01000001
Gammaproteobacteria
Pseudomonas saponiphila [FNTJ]
2413132
2413045
-
Ser
TGA
[ENA]
¡û
>W1710543044
FNZP01000007
Gammaproteobacteria
Pseudomonas sp. NFPP18 [FNZP]
60471
60558
+
Ser
TGA
[ENA]
¡û
>W1710544145
FOAQ01000001
Gammaproteobacteria
Pseudomonas sp. NFPP10 [FOAQ]
1234673
1234760
+
Ser
TGA
[ENA]
¡û
>W1710550057
FOEY01000011
Gammaproteobacteria
Pseudomonas sp. NFPP19 [FOEY]
15288
15201
-
Ser
TGA
[ENA]
¡û
>W1710555705
FOJR01000007
Gammaproteobacteria
Pseudomonas sp. NFPP13 [FOJR]
60471
60558
+
Ser
TGA
[ENA]
¡û
>W1710564700
FOQR01000001
Gammaproteobacteria
Pseudomonas sp. NFPP08 [FOQR]
16400
16313
-
Ser
TGA
[ENA]
¡û
>W1710569288
FOUH01000001
Gammaproteobacteria
Pseudomonas sp. NFPP05 [FOUH]
16238
16151
-
Ser
TGA
[ENA]
¡û
>W1710578037
FPBG01000007
Gammaproteobacteria
Pseudomonas sp. NFPP25 [FPBG]
392708
392621
-
Ser
TGA
[ENA]
¡û
>W1710581059
FPJV01000001
Gammaproteobacteria
Pseudomonas sp. NFPP09 [FPJV]
16287
16200
-
Ser
TGA
[ENA]
¡û
>W1710581657
FPKG01000007
Gammaproteobacteria
Pseudomonas sp. NFPP14 [FPKG]
60471
60558
+
Ser
TGA
[ENA]
¡û
>W1710581826
FPKJ01000007
Gammaproteobacteria
Pseudomonas sp. NFPP16 [FPKJ]
60471
60558
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK