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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45191 (60 seq.)
>A171000819
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
1468982
1469067
+
Leu
TAG
-
¡û
>A171001146
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2531703
2531619
-
Leu
TAG
-
¡û
>A171002454
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1843457
1843541
+
Leu
TAG
-
¡û
>A171003075
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1192515
1192431
-
Leu
TAG
-
¡û
>A171003161
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1313585
1313669
+
Leu
TAG
-
¡û
>A171003500
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
1352513
1352429
-
Leu
TAG
-
¡û
>A171004153
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1964154
1964070
-
Leu
TAG
-
¡û
>A171006920
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
2597296
2597380
+
Leu
TAG
-
¡û
>ENV08001840
ABOG01025101
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
4
91
+
Leu
TAG
[ENA]
¡û
>ENV08001878
ABOG01075734
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
92
5
-
Leu
TAG
[ENA]
¡û
>WENV170009261
APHM01021981
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1127
1211
+
Leu
TAG
[ENA]
¢þ
>W1910226711
FMZP01000033
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
12994
13078
+
Leu
TAG
[ENA]
¡û
>W1910227097
FNKQ01000002
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
68863
68948
+
Leu
TAG
[ENA]
¡û
>W1910229930
FOIS01000001
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
312759
312675
-
Leu
TAG
[ENA]
¡û
>W1910230259
FOKW01000012
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
106701
106786
+
Leu
TAG
[ENA]
¡û
>W1910230378
FOOQ01000004
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
112613
112528
-
Leu
TAG
[ENA]
¡û
>W1910230772
FOYT01000005
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
136667
136583
-
Leu
TAG
[ENA]
¡û
>W1910230837
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1047001
1046916
-
Leu
TAG
[ENA]
¡û
>W1910568525
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
919173
919089
-
Leu
TAG
[ENA]
¡û
>W1910569047
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
583977
584061
+
Leu
TAG
[ENA]
¡û
>W1910572566
JMIP02000015
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
238236
238321
+
Leu
TAG
[ENA]
¡û
>W1910572708
JNCS01000003
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
197998
198082
+
Leu
TAG
[ENA]
¡û
>W1910575882
JROF01000014
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
64156
64072
-
Leu
TAG
[ENA]
¡û
>W1910583014
JXAN01000045
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
14693
14609
-
Leu
TAG
[ENA]
¡û
>W1910646145
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
964301
964217
-
Leu
TAG
[ENA]
¡û
>W1910657550
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
270377
270461
+
Leu
TAG
[ENA]
¡û
>W1911572219
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
2814938
2815022
+
Leu
TAG
[ENA]
¡û
>W1911682206
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
734307
734392
+
Leu
TAG
[ENA]
¡û
>W1911682348
QKNY01000007
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
193900
193984
+
Leu
TAG
[ENA]
¡û
>W1911717806
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
112994
113079
+
Leu
TAG
[ENA]
¡û
>W1911717982
QQTY01000001
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
482848
482763
-
Leu
TAG
[ENA]
¡û
>W1610000784
ABTX01000003
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
89730
89815
+
Leu
TAG
[ENA]
¡û
>W1610001061
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
249827
249743
-
Leu
TAG
[ENA]
¡û
>W1610003685
AGCZ01000698
Euryarchaeota
halophilic archaeon J07HB67 [AGCZ]
1127
1211
+
Leu
TAG
[ENA]
¡û
>W1610004065
AGFZ01000098
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
1704
1788
+
Leu
TAG
[ENA]
¡û
>W1610004118
AGIN01000001
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
217318
217234
-
Leu
TAG
[ENA]
¡û
>W1610005366
AJVG01000004
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
77852
77936
+
Leu
TAG
[ENA]
¡û
>W1610011765
AOHT01000014
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
91970
92055
+
Leu
TAG
[ENA]
¡û
>W1610011934
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
204549
204633
+
Leu
TAG
[ENA]
¡û
>W1610011971
AOHY01000001
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
27946
27862
-
Leu
TAG
[ENA]
¡û
>W1610012095
AOIA01000151
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
80584
80668
+
Leu
TAG
[ENA]
¡û
>W1610012212
AOID01000031
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
24746
24662
-
Leu
TAG
[ENA]
¡û
>W1610012235
AOIE01000006
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
15249
15333
+
Leu
TAG
[ENA]
¡û
>W1610012290
AOII01000032
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
2665
2581
-
Leu
TAG
[ENA]
¡û
>W1610012330
AOIJ01000035
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
49622
49706
+
Leu
TAG
[ENA]
¡û
>W1610012384
AOIK01000025
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
460374
460290
-
Leu
TAG
[ENA]
¡û
>W1610012413
AOIL01000012
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
128164
128248
+
Leu
TAG
[ENA]
¡û
>W1610012461
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
252044
252128
+
Leu
TAG
[ENA]
¡û
>W1610012546
AOIO01000021
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
220469
220553
+
Leu
TAG
[ENA]
¡û
>W1610012615
AOIP01000032
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
36534
36618
+
Leu
TAG
[ENA]
¡û
>W1610012732
AOIS01000037
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
156816
156901
+
Leu
TAG
[ENA]
¡û
>W1610012793
AOIT01000053
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
4638
4554
-
Leu
TAG
[ENA]
¡û
>W1610012848
AOIV01000004
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
92117
92201
+
Leu
TAG
[ENA]
¡û
>W1610014425
AOLZ01000038
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
37089
37173
+
Leu
TAG
[ENA]
¡û
>W1610014479
AOMA01000160
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
50023
49939
-
Leu
TAG
[ENA]
¡û
>W1610024359
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
508817
508904
+
Leu
TAG
[ENA]
¡û
>W1610041342
BANO01000059
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 [BANO]
3929
4013
+
Leu
TAG
[ENA]
¡û
>W1610041552
BATA01000101
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
1731
1647
-
Leu
TAG
[ENA]
¡û
>W1610082965
CBMA010000006
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
24717
24801
+
Leu
TAG
[ENA]
¡û
>W1610083008
CBMB010000002
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
180314
180398
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK