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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451920 (20 seq.)
>W131218418
ATXQ01000019
Gammaproteobacteria
Denitrificimonas caeni DSM 24390 [ATXQ]
1131
1056
-
Thr
GGT
[ENA]
¡û
>WENV170012486
ASRK01003938
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
213
138
-
Thr
GGT
[ENA]
¢þ
>WENV170012551
ASRL01001025
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3135
3210
+
Thr
GGT
[ENA]
¢þ
>WENV170012621
ASRM01004116
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
585
660
+
Thr
GGT
[ENA]
¢þ
>WENV170012800
ASRO01003043
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
223
148
-
Thr
GGT
[ENA]
¢þ
>WENV170014492
AYRG01002732
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
223
148
-
Thr
GGT
[ENA]
¢þ
>WENV170672868
LAZR01002814
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
289
214
-
Thr
GGT
[ENA]
¢þ
>WENV170684960
LFRM01065834
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1335
1410
+
Thr
GGT
[ENA]
¢þ
>WENV170704318
LLEJ01002820
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
154
229
+
Thr
GGT
[ENA]
¢þ
>WENV170704723
LLEM01000887
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
166
241
+
Thr
GGT
[ENA]
¢þ
>WENV170704925
LLEN01015804
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
103
178
+
Thr
GGT
[ENA]
¢þ
>C151093924
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
2051954
2052029
+
Thr
GGT
-
¡û
>C151093991
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1415157
1415082
-
Thr
GGT
-
¡û
>C151094016
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
846200
846275
+
Thr
GGT
-
¡û
>C151094129
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1895746
1895821
+
Thr
GGT
-
¡û
>C151094198
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
1178631
1178556
-
Thr
GGT
-
¡û
>C151094251
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1097437
1097362
-
Thr
GGT
-
¡û
>C161041365
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1573955
1574030
+
Thr
GGT
[Ensembl]
¡û
>W1610607229
LFTS01000052
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
1335
1410
+
Thr
GGT
[ENA]
¡û
>W1710728516
LFTS01000052
Gammaproteobacteria
Gammaproteobacteria bacterium DTU040 [LFTS]
1335
1410
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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