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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451922 (41 seq.)
>C171067976
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
286980
287055
+
Thr
TGT
-
¡û
>W131229465
AUGV01000003
Gammaproteobacteria
Oceanobacter kriegii DSM 6294 [AUGV]
490025
490100
+
Thr
TGT
[ENA]
¡û
>WENV180051962
MPLU02257860
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
5499
5574
+
Thr
TGT
[ENA]
¢þ
>WENV180293818
OBIY01001668
[OBIY] beach sand metagenome; beach sand
3339
3264
-
Thr
TGT
[ENA]
¢þ
>WENV180293849
OBIY01002285
[OBIY] beach sand metagenome; beach sand
4454
4529
+
Thr
TGT
[ENA]
¢þ
>WENV180309592
OBJS01009010
[OBJS] beach sand metagenome; beach sand
861
936
+
Thr
TGT
[ENA]
¢þ
>WENV182541897
OJAV01000001
[OJAV] seawater metagenome; Sea water
157516
157441
-
Thr
TGT
[ENA]
¢þ
>WENV182542288
OJAY01000013
[OJAY] seawater metagenome; Sea water
76145
76220
+
Thr
TGT
[ENA]
¢þ
>WENV182544010
OJBE01000005
[OJBE] seawater metagenome; Sea water
76095
76170
+
Thr
TGT
[ENA]
¢þ
>WENV182546859
OJBP01009591
[OJBP] seawater metagenome; Sea water
451
526
+
Thr
TGT
[ENA]
¢þ
>WENV182546929
OJBR01000003
[OJBR] seawater metagenome; Sea water
157507
157432
-
Thr
TGT
[ENA]
¢þ
>WENV182549277
OJBY01000109
[OJBY] seawater metagenome; Sea water
34224
34149
-
Thr
TGT
[ENA]
¢þ
>WENV182549762
OJBZ01000004
[OJBZ] seawater metagenome; Sea water
157510
157435
-
Thr
TGT
[ENA]
¢þ
>WENV182557441
OJDK01000004
[OJDK] seawater metagenome; Sea water
88747
88672
-
Thr
TGT
[ENA]
¢þ
>WENV182559507
OJDQ01000010
[OJDQ] seawater metagenome; Sea water
76377
76302
-
Thr
TGT
[ENA]
¢þ
>WENV182562204
OJDZ01000073
[OJDZ] seawater metagenome; Sea water
38565
38640
+
Thr
TGT
[ENA]
¢þ
>WENV183055127
OLGX01000007
[OLGX] seawater metagenome; Sea water
76145
76220
+
Thr
TGT
[ENA]
¢þ
>WENV183057311
OLHL01000323
[OLHL] seawater metagenome; Sea water
12148
12223
+
Thr
TGT
[ENA]
¢þ
>WENV183059589
OLHV01000031
[OLHV] seawater metagenome; Sea water
32281
32206
-
Thr
TGT
[ENA]
¢þ
>WENV170015633
AZII01000253
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
43
118
+
Thr
TGT
[ENA]
¢þ
>WENV170016528
AZIK01011598
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
256279
256354
+
Thr
TGT
[ENA]
¢þ
>WENV170228934
CEQG01054528
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1367
1292
-
Thr
TGT
[ENA]
¢þ
>WENV170231046
CEQH01115024
[CEQH] marine metagenome genome assembly TARA_076_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
303
228
-
Thr
TGT
[ENA]
¢þ
>WENV170387698
CETZ01003536
[CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
69659
69734
+
Thr
TGT
[ENA]
¢þ
>WENV170476418
CEVI01108507
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
371
296
-
Thr
TGT
[ENA]
¢þ
>WENV170564899
CZQC01000006
[CZQC] hydrothermal vent metagenome; ocean water
22612
22687
+
Thr
TGT
[ENA]
¢þ
>WENV170570927
FLOH01000040
[FLOH] marine metagenome; water
165386
165311
-
Thr
TGT
[ENA]
¢þ
>WENV170923535
MDTG01050873
[MDTG] marine metagenome; seawater
4271
4196
-
Thr
TGT
[ENA]
¢þ
>C181178975
CP029478
Gammaproteobacteria
Gammaproteobacteria bacterium ESL0073 [CP029478]
1474078
1474153
+
Thr
TGT
-
¡û
>C191065618
CP029822
Gammaproteobacteria
Entomomonas moraniae QZS01 [CP029822]
903324
903399
+
Thr
TGT
-
¡û
>C151013071
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
166977
167052
+
Thr
TGT
[Ensembl]
¡û
>C151093935
CP012358
Gammaproteobacteria
Thiopseudomonas alkaliphila B4199 [CP012358]
1558487
1558412
-
Thr
TGT
-
¡û
>C151093976
CP012359
Gammaproteobacteria
Thiopseudomonas alkaliphila C6819 [CP012359]
1942472
1942547
+
Thr
TGT
-
¡û
>C151094052
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
346750
346675
-
Thr
TGT
-
¡û
>C151094053
CP012360
Gammaproteobacteria
Thiopseudomonas alkaliphila C6918 [CP012360]
336883
336808
-
Thr
TGT
-
¡û
>C151094079
CP012361
Gammaproteobacteria
Thiopseudomonas alkaliphila D2441 [CP012361]
1530765
1530840
+
Thr
TGT
-
¡û
>C151094138
CP012362
Gammaproteobacteria
Thiopseudomonas alkaliphila D3318 [CP012362]
1412753
1412678
-
Thr
TGT
-
¡û
>C151094175
CP012363
Gammaproteobacteria
Thiopseudomonas alkaliphila E1086 [CP012363]
1674417
1674492
+
Thr
TGT
-
¡û
>C151094228
CP012364
Gammaproteobacteria
Thiopseudomonas alkaliphila E1148 [CP012364]
1570074
1570149
+
Thr
TGT
-
¡û
>C161041381
CP012365
Gammaproteobacteria
Thiopseudomonas alkaliphila E5571 [CP012365]
1063208
1063133
-
Thr
TGT
[Ensembl]
¡û
>C131020984
HF680312
Gammaproteobacteria
Thalassolituus oleivorans MIL-1 [HF680312]
162111
162186
+
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK