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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45198 (41 seq.)
>A171000780
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
2491483
2491568
+
Ser
GCT
-
¡û
>A171002613
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
772576
772661
+
Ser
GCT
-
¡û
>A171003946
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
786411
786496
+
Ser
GCT
-
¡û
>A171005803
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2378017
2378102
+
Ser
GCT
-
¡û
>A171006848
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
214422
214507
+
Ser
GCT
-
¡û
>WENV170008848
APHM01010156
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
854
766
-
Ser
GCT
[ENA]
¢þ
>At0745
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
49406
49490
+
Ser
GCT
[Ensembl]
¡û
>WENV170660073
JXWS01129726
[JXWS] soil metagenome; rice field; elevated CO2
200
285
+
Ser
GCT
[ENA]
¢þ
>W1910006907
BBMP01000011
Euryarchaeota
Halococcus sediminicola CBA1101 [BBMP]
151749
151664
-
Ser
GCT
[ENA]
¡û
>W1910175095
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
824000
823915
-
Ser
GCT
[ENA]
¡û
>W1910226734
FNBK01000008
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
148636
148551
-
Ser
GCT
[ENA]
¡û
>W1910227038
FNIA01000003
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
201573
201657
+
Ser
GCT
[ENA]
¡û
>W1910228389
FNOF01000006
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
11877
11962
+
Ser
GCT
[ENA]
¡û
>W1910229693
FOCX01000005
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
204259
204344
+
Ser
GCT
[ENA]
¡û
>W1910230807
FOZK01000003
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
44232
44317
+
Ser
GCT
[ENA]
¡û
>W1910583036
JXAO01000001
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
252890
252805
-
Ser
GCT
[ENA]
¡û
>W1910617586
LIUF01000001
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
35454
35369
-
Ser
GCT
[ENA]
¡û
>W1911709463
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
527718
527803
+
Ser
GCT
[ENA]
¡û
>W1911709605
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
356321
356236
-
Ser
GCT
[ENA]
¡û
>W1911749411
QWGG01000004
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
239646
239731
+
Ser
GCT
[ENA]
¡û
>W1911770007
QXIK01000001
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
341675
341590
-
Ser
GCT
[ENA]
¡û
>W1911824357
QZWE01000023
Euryarchaeota
Halococcus sp. IIIV-5B [QZWE]
8494
8409
-
Ser
GCT
[ENA]
¡û
>W1610000818
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1234340
1234255
-
Ser
GCT
[ENA]
¡û
>W1610005319
AJRK01000057
Euryarchaeota
Halococcus hamelinensis 100A6 [AJRK]
11029
10944
-
Ser
GCT
[ENA]
¡û
>W1610012813
AOIU01000024
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
14115
14200
+
Ser
GCT
[ENA]
¡û
>W1610014140
AOLQ01000038
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
230563
230478
-
Ser
GCT
[ENA]
¡û
>W1610014198
AOLR01000021
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
82625
82540
-
Ser
GCT
[ENA]
¡û
>W1610014212
AOLS01000032
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
84927
85012
+
Ser
GCT
[ENA]
¡û
>W1610014277
AOLW01000019
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
99217
99132
-
Ser
GCT
[ENA]
¡û
>W1610014317
AOLX01000015
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
362851
362766
-
Ser
GCT
[ENA]
¡û
>W1610014394
AOLY01000037
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
497230
497145
-
Ser
GCT
[ENA]
¡û
>W1610014515
AOMB01000041
Euryarchaeota
Halococcus hamelinensis 100A6 [AOMB]
155984
156069
+
Ser
GCT
[ENA]
¡û
>W1610014559
AOMC01000152
Euryarchaeota
Halococcus morrhuae DSM 1307 [AOMC]
28006
27921
-
Ser
GCT
[ENA]
¡û
>W1610014569
AOMD01000005
Euryarchaeota
Halococcus saccharolyticus DSM 5350 [AOMD]
92950
93035
+
Ser
GCT
[ENA]
¡û
>W1610014623
AOME01000054
Euryarchaeota
Halococcus salifodinae DSM 8989 [AOME]
117226
117141
-
Ser
GCT
[ENA]
¡û
>W1610014690
AOMF01000171
Euryarchaeota
Halococcus thailandensis JCM 13552 [AOMF]
47756
47841
+
Ser
GCT
[ENA]
¡û
>W1610018983
AQZY01000010
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
926763
926678
-
Ser
GCT
[ENA]
¡û
>W1610040565
BAFM01000026
Euryarchaeota
Halococcus agarilyticus 197A [BAFM]
26274
26189
-
Ser
GCT
[ENA]
¡û
>W1610061890
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
50431
50516
+
Ser
GCT
[ENA]
¡û
>W1610061954
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
2886852
2886767
-
Ser
GCT
[ENA]
¡û
>W1610881031
LRHL01000034
Euryarchaeota
Haloarcula sp. K1 [LRHL]
201191
201276
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK