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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45224 (28 seq.)
>A171000908
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1332254
1332339
+
Ser
GGA
-
¡û
>A171000909
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1332374
1332460
+
Ser
GGA
-
¡û
>A171002025
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
766489
766575
+
Ser
GGA
-
¡û
>A171002265
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
1566428
1566343
-
Ser
GGA
-
¡û
>A171004015
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
386729
386643
-
Ser
GGA
-
¡û
>A171007308
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
764628
764714
+
Ser
GGA
-
¡û
>A171007383
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
318495
318409
-
Ser
GGA
-
¡û
>A171007416
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
1472342
1472256
-
Ser
GGA
-
¡û
>A171007679
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
1415579
1415494
-
Ser
GGA
-
¡û
>WENV180037792
FVAA011731733
[FVAA] soil metagenome; Soil
140
226
+
Ser
GGA
[ENA]
¢þ
>WENV181230148
OFEK01000333
[OFEK] activated sludge metagenome; Anaerobic digester
12838
12924
+
Ser
GGA
[ENA]
¢þ
>WENV181230172
OFEK01000388
[OFEK] activated sludge metagenome; Anaerobic digester
30303
30217
-
Ser
GGA
[ENA]
¢þ
>WENV181312298
OFJB01073704
[OFJB] sludge metagenome; sludge
365
451
+
Ser
GGA
[ENA]
¢þ
>WENV170651466
JRYF01021346
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
240
154
-
Ser
GGA
[ENA]
¢þ
>WENV170670497
LAHT01023110
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
125
210
+
Ser
GGA
[ENA]
¢þ
>WENV170671119
LAHU01015446
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
2394
2308
-
Ser
GGA
[ENA]
¢þ
>WENV170676491
LDZS01000101
[LDZS] terrestrial metagenome; oil reservoir sample K3
10390
10304
-
Ser
GGA
[ENA]
¢þ
>WENV170677308
LDZT01004901
[LDZT] terrestrial metagenome; oil reservoir sample SB1
7684
7598
-
Ser
GGA
[ENA]
¢þ
>WENV170977013
MTKZ01015691
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
152
238
+
Ser
GGA
[ENA]
¢þ
>W1910574923
JQJK01000008
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
96083
95997
-
Ser
GGA
[ENA]
¡û
>W1910574951
JQKN01000001
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
96122
96036
-
Ser
GGA
[ENA]
¡û
>W1910575112
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
1636966
1636880
-
Ser
GGA
[ENA]
¡û
>W1910635152
LMVM01000038
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
69284
69199
-
Ser
GGA
[ENA]
¡û
>W1910655447
LZPM01000007
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
19841
19756
-
Ser
GGA
[ENA]
¡û
>W1610006237
AMGN01000030
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
10796
10710
-
Ser
GGA
[ENA]
¡û
>W1610011016
AMPO01000004
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
44118
44032
-
Ser
GGA
[ENA]
¡û
>W1610049149
BBES01000006
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
26751
26665
-
Ser
GGA
[ENA]
¡û
>W1610613862
LGGL01000008
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
7684
7598
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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