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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452308 (58 seq.)
>W1711115557
LUAH01000011
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
150855
150928
+
Gly
GCC
[ENA]
¡û
>W1711115584
LUAH01000065
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
89358
89431
+
Gly
GCC
[ENA]
¡û
>W1711506333
MKWH01000057
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
82
9
-
Gly
GCC
[ENA]
¡û
>C171089507
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
3944725
3944798
+
Gly
GCC
-
¡û
>C171089514
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5473850
5473923
+
Gly
GCC
-
¡û
>C171118443
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
3520774
3520847
+
Gly
GCC
-
¡û
>C171118450
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5189012
5189085
+
Gly
GCC
-
¡û
>WENV180373891
OBOJ01038208
[OBOJ] marine metagenome; seawater
276
203
-
Gly
GCC
[ENA]
¢þ
>WENV180592574
OCOW01020962
[OCOW] marine metagenome; Sterivex cartridges
216
289
+
Gly
GCC
[ENA]
¢þ
>W141075068
ASZT01000534
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
178712
178637
-
Gly
GCC
[ENA]
¡û
>W141075070
ASZT01000534
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
158516
158441
-
Gly
GCC
[ENA]
¡û
>W141075072
ASZT01000534
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
157962
157887
-
Gly
GCC
[ENA]
¡û
>WENV183064762
OLII01000384
[OLII] seawater metagenome; Sea water
14077
14004
-
Gly
GCC
[ENA]
¢þ
>WENV183726554
PJTO01000008
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
436539
436612
+
Gly
GCC
[ENA]
¢þ
>WENV183726757
PJTO01000129
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
89155
89228
+
Gly
GCC
[ENA]
¢þ
>WENV183727534
PJTP01000012
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
436539
436612
+
Gly
GCC
[ENA]
¢þ
>WENV183727730
PJTP01000118
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
59914
59987
+
Gly
GCC
[ENA]
¢þ
>WENV183728732
PJTQ01000333
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
35995
36068
+
Gly
GCC
[ENA]
¢þ
>WENV183728960
PJTQ01001503
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
6980
7053
+
Gly
GCC
[ENA]
¢þ
>WENV183730245
PJTR01006931
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
138
65
-
Gly
GCC
[ENA]
¢þ
>WENV183730739
PJTS01000465
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
121
48
-
Gly
GCC
[ENA]
¢þ
>WENV183730807
PJTS01000905
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
13281
13354
+
Gly
GCC
[ENA]
¢þ
>WENV183735028
PJUA01000411
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
25240
25313
+
Gly
GCC
[ENA]
¢þ
>WENV183735067
PJUA01000682
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
13400
13473
+
Gly
GCC
[ENA]
¢þ
>WENV183735197
PJUA01002438
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3120
3193
+
Gly
GCC
[ENA]
¢þ
>WENV183735283
PJUA01007457
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1079
1151
+
Gly
GCC
[ENA]
¢þ
>WENV183735677
PJUB01000490
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
13400
13473
+
Gly
GCC
[ENA]
¢þ
>WENV183735769
PJUB01001996
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
101
28
-
Gly
GCC
[ENA]
¢þ
>WENV183735771
PJUB01002017
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
113
40
-
Gly
GCC
[ENA]
¢þ
>WENV183735908
PJUB01010392
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
113
40
-
Gly
GCC
[ENA]
¢þ
>WENV183736404
PJUC01001984
[PJUC] soil metagenome; Soil enriched on filter paper
3344
3271
-
Gly
GCC
[ENA]
¢þ
>WENV183736550
PJUC01012248
[PJUC] soil metagenome; Soil enriched on filter paper
852
925
+
Gly
GCC
[ENA]
¢þ
>WENV183736676
PJUC01038995
[PJUC] soil metagenome; Soil enriched on filter paper
211
284
+
Gly
GCC
[ENA]
¢þ
>WENV183737164
PJUD01000770
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
139
66
-
Gly
GCC
[ENA]
¢þ
>WENV183739109
PJUE01001764
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
139
66
-
Gly
GCC
[ENA]
¢þ
>WENV183741114
PJUF01042146
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
79
6
-
Gly
GCC
[ENA]
¢þ
>WENV183741520
PJUG01000037
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
139
66
-
Gly
GCC
[ENA]
¢þ
>WENV183741989
PJUH01000028
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
139
66
-
Gly
GCC
[ENA]
¢þ
>WENV183742709
PJUI01000063
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
139
66
-
Gly
GCC
[ENA]
¢þ
>WENV183743104
PJUJ01000037
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
139
66
-
Gly
GCC
[ENA]
¢þ
>WENV183743918
PJUK01000042
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
139
66
-
Gly
GCC
[ENA]
¢þ
>WENV183745302
PJUL01020561
[PJUL] feces metagenome; Chicken feces enriched on filter paper
206
281
+
Gly
GCC
[ENA]
¢þ
>WENV170895774
MDTD01084994
[MDTD] marine metagenome; seawater
25955
25880
-
Gly
GCC
[ENA]
¢þ
>WENV170934043
MDTG01231559
[MDTG] marine metagenome; seawater
4574
4501
-
Gly
GCC
[ENA]
¢þ
>W141526510
JHBV01000044
Bacteroidota
Aureispira sp. CCB-QB1 [JHBV]
71187
71260
+
Gly
GCC
[ENA]
¡û
>W141526512
JHBV01000047
Bacteroidota
Aureispira sp. CCB-QB1 [JHBV]
14761
14686
-
Gly
GCC
[ENA]
¡û
>W1910378069
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
68440
68515
+
Gly
GCC
[ENA]
¡û
>W1910378071
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
76348
76423
+
Gly
GCC
[ENA]
¡û
>W1910378073
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
76945
77020
+
Gly
GCC
[ENA]
¡û
>W1910664348
MCAQ01000003
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
293208
293135
-
Gly
GCC
[ENA]
¡û
>W1910664372
MCAQ01000012
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
132935
132862
-
Gly
GCC
[ENA]
¡û
>W1810503632
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
216682
216607
-
Gly
GCC
[ENA]
¡û
>W1810503634
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
209014
208939
-
Gly
GCC
[ENA]
¡û
>W1810503636
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
208457
208382
-
Gly
GCC
[ENA]
¡û
>C151047402
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1428280
1428205
-
Gly
GCC
[Ensembl]
¡û
>WENV044468
AACY022424377
Marine microbial communities from Global Ocean Sampling (GOS)
622
545
-
Gly
GCC
[ENA]
>W1511590226
LBGU01000014
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
25604
25677
+
Gly
GCC
[ENA]
¡û
>W1511590257
LBGU01000026
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
20613
20686
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK