This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452309 (20 seq.)
>W131167747
ARDN01000001
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
689508
689581
+
Gly
GCC
[ENA]
¡û
>WENV170024509
BCQL01070343
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
4
79
+
Gly
GCC
[ENA]
¢þ
>WENV170024510
BCQL01070343
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
113
188
+
Gly
GCC
[ENA]
¢þ
>WENV170024511
BCQL01070343
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
221
294
+
Gly
GCC
[ENA]
¢þ
>WENV170024513
BCQL01070343
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
444
517
+
Gly
GCC
[ENA]
¢þ
>W1910377947
FUKU01000067
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
129325
129398
+
Gly
GCC
[ENA]
¡û
>C151047404
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1427728
1427653
-
Gly
GCC
[Ensembl]
¡û
>W1511590342
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3462346
3462421
+
Gly
GCC
[ENA]
¡û
>W1511590343
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3462455
3462530
+
Gly
GCC
[ENA]
¡û
>W1511590344
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3462562
3462637
+
Gly
GCC
[ENA]
¡û
>W1511590346
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3462784
3462859
+
Gly
GCC
[ENA]
¡û
>W1511590347
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3462924
3462999
+
Gly
GCC
[ENA]
¡û
>W1511590349
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3463147
3463220
+
Gly
GCC
[ENA]
¡û
>C161046359
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
437358
437283
-
Gly
GCC
-
¡û
>C161046360
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
437249
437174
-
Gly
GCC
-
¡û
>C161046361
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
437143
437068
-
Gly
GCC
-
¡û
>C161046363
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
436921
436846
-
Gly
GCC
-
¡û
>C161046364
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
436782
436707
-
Gly
GCC
-
¡û
>C161046366
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
436559
436486
-
Gly
GCC
-
¡û
>C131003288
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
1112836
1112909
+
Gly
GCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK