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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452342 (22 seq.)
>W131109440
APHV01000106
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
53968
53893
-
Asn
GTT
[ENA]
¡û
>WENV170002606
AGTN01081945
[AGTN] bioreactor metagenome; poplar biomass
120
195
+
Asn
GTT
[ENA]
¢þ
>WENV170003949
AGTN01511467
[AGTN] bioreactor metagenome; poplar biomass
260
185
-
Asn
GTT
[ENA]
¢þ
>C181063178
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
196841
196766
-
Asn
GTT
-
¡û
>C181177429
CP029353
Alphaproteobacteria
Azospirillum thermophilum CFH 70021 [CP029352, CP029353, CP029354, CP029355]
1418553
1418628
+
Asn
GTT
-
¡û
>W141520267
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1682367
1682292
-
Asn
GTT
[ENA]
¡û
>C191087901
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
530474
530549
+
Asn
GTT
-
¡û
>C191088057
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
388734
388659
-
Asn
GTT
-
¡û
>C191088061
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
118978
119053
+
Asn
GTT
-
¡û
>W1910613071
LGQV01000111
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
9133
9058
-
Asn
GTT
[ENA]
¡û
>W1910613423
LGRK01000082
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
42522
42447
-
Asn
GTT
[ENA]
¡û
>W1911138077
NOWT01000003
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
77265
77340
+
Asn
GTT
[ENA]
¡û
>W1911768764
QXHE01000025
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
3260
3335
+
Asn
GTT
[ENA]
¡û
>W1810222269
POQV01000010
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
157172
157097
-
Asn
GTT
[ENA]
¡û
>W1810223541
POTD01000006
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
284545
284470
-
Asn
GTT
[ENA]
¡û
>W1810226070
POWG01000001
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
386006
385931
-
Asn
GTT
[ENA]
¡û
>W1810692587
QLKQ01000038
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
4305
4380
+
Asn
GTT
[ENA]
¡û
>C151034774
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1370772
1370697
-
Asn
GTT
[Ensembl]
¡û
>C121017730
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
1825591
1825516
-
Asn
GTT
[Ensembl]
¡û
>C161047390
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1673367
1673292
-
Asn
GTT
[Ensembl]
¡û
>W1710626713
JPIR01000073
Alphaproteobacteria
Azospirillum brasilense [JPIR]
53183
53258
+
Asn
GTT
[ENA]
¡û
>W1710626792
JPIS01000102
Alphaproteobacteria
Azospirillum brasilense [JPIS]
31363
31288
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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