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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452409 (41 seq.)
>W1711018994
LQXJ01000039
Gammaproteobacteria
Marinobacter sp. C18 [LQXJ]
3622
3547
-
Val
TAC
[ENA]
¡û
>W1711078055
LSMM01000049
Gammaproteobacteria
Marinobacter sp. Hex_13 [LSMM]
44333
44408
+
Val
TAC
[ENA]
¡û
>W131166714
ARCR01000016
Gammaproteobacteria
Marinobacter gelidimuriae BF04_CF-4 [ARCR]
11818
11743
-
Val
TAC
[ENA]
¡û
>C171114789
CP020931
Gammaproteobacteria
Marinobacter salarius SMR5 [CP020931]
1638731
1638806
+
Val
TAC
-
¡û
>w027866
ABCP01000050
Gammaproteobacteria
Marinobacter algicola DG893 [ABCP]
20089
20012
-
Val
TAC
[ENA]
¡û
>w023525
AAXY01000002
Gammaproteobacteria
Marinobacter sp. ELB17 [AAXY]
146020
145948
-
Val
TAC
[ENA]
¡û
>WENV181234412
OFEU01000106
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
47590
47515
-
Val
TAC
[ENA]
¢þ
>WENV181321390
OFKM01000028
[OFKM] marine metagenome; sea ice
3620
3545
-
Val
TAC
[ENA]
¢þ
>WENV181322972
OFKW01000017
[OFKW] marine metagenome; sea ice
49234
49159
-
Val
TAC
[ENA]
¢þ
>WENV181324332
OFLD01021685
[OFLD] marine metagenome; sea ice
218
293
+
Val
TAC
[ENA]
¢þ
>WENV182547705
OJBT01000944
[OJBT] seawater metagenome; Sea water
3387
3312
-
Val
TAC
[ENA]
¢þ
>WENV182554028
OJCS01008019
[OJCS] seawater metagenome; Sea water
430
505
+
Val
TAC
[ENA]
¢þ
>WENV182563928
OJED01003531
[OJED] seawater metagenome; Sea water
200
125
-
Val
TAC
[ENA]
¢þ
>WENV182574649
OJFS01000261
[OJFS] seawater metagenome; Sea water
197
122
-
Val
TAC
[ENA]
¢þ
>WENV182576356
OJFX01013490
[OJFX] seawater metagenome; Sea water
198
123
-
Val
TAC
[ENA]
¢þ
>WENV182577339
OJGD01000912
[OJGD] seawater metagenome; Sea water
198
123
-
Val
TAC
[ENA]
¢þ
>WENV182580031
OJGU01001637
[OJGU] seawater metagenome; Sea water
198
123
-
Val
TAC
[ENA]
¢þ
>WENV182585130
OJHH01001825
[OJHH] seawater metagenome; Sea water
3385
3310
-
Val
TAC
[ENA]
¢þ
>WENV182591742
OJIO01003284
[OJIO] seawater metagenome; Sea water
4858
4933
+
Val
TAC
[ENA]
¢þ
>WENV183615220
OOEA01114700
[OOEA] marine metagenome; sea ice
159
84
-
Val
TAC
[ENA]
¢þ
>WENV183628510
OOGO01000232
[OOGO] marine metagenome; sea ice
7678
7753
+
Val
TAC
[ENA]
¢þ
>WENV183802941
PVBE010799671
[PVBE] marine metagenome; water
201
126
-
Val
TAC
[ENA]
¢þ
>WENV170664441
JYMV01016285
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
77041
76966
-
Val
TAC
[ENA]
¢þ
>WENV170664945
JYMV01021253
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
758686
758611
-
Val
TAC
[ENA]
¢þ
>C191018833
CP021333
Gammaproteobacteria
Marinobacter salarius HL2708#2 [CP021333]
3205347
3205422
+
Val
TAC
-
¡û
>W141703094
JMLY01000001
Gammaproteobacteria
Marinobacter sp. HL-58 [JMLY]
3454350
3454275
-
Val
TAC
[ENA]
¡û
>W141819731
JQMK01000012
Gammaproteobacteria
Marinobacter sp. MCTG268 [JQMK]
719615
719690
+
Val
TAC
[ENA]
¡û
>W1910000589
AOMK01000893
Gammaproteobacteria
Marinobacter sp. DS40M8 [AOMK]
3443
3368
-
Val
TAC
[ENA]
¡û
>W1910796233
MSCH01000003
Gammaproteobacteria
Psychrosphaera saromensis SA4-48 [MSCH]
2267801
2267726
-
Val
TAC
[ENA]
¡û
>W1810057882
PDJA01000001
Gammaproteobacteria
Marinobacter sp. LV10MA510-1 [PDJA]
4362176
4362251
+
Val
TAC
[ENA]
¡û
>W1810058527
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
2724840
2724915
+
Val
TAC
[ENA]
¡û
>W1810592260
QFWX01000004
Gammaproteobacteria
Marinobacter vulgaris F01 [QFWX]
445619
445544
-
Val
TAC
[ENA]
¡û
>C151017537
CP007152
Gammaproteobacteria
Marinobacter salarius R9SW1 [CP007152]
300187
300262
+
Val
TAC
[Ensembl]
¡û
>C151083222
CP011494
Gammaproteobacteria
Marinobacter psychrophilus 20041 [CP011494]
1101352
1101427
+
Val
TAC
[Ensembl]
¡û
>C131005671
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
1022635
1022710
+
Val
TAC
[Ensembl]
¡û
>W1610629371
LIHP01000002
Gammaproteobacteria
Marinobacter sp. HL-58 [LIHP]
62611
62686
+
Val
TAC
[ENA]
¡û
>W1610917071
LSMM01000049
Gammaproteobacteria
Marinobacter sp. Hex_13 [LSMM]
44333
44408
+
Val
TAC
[ENA]
¡û
>W1710528411
FNNE01000012
Gammaproteobacteria
Marinobacter mobilis [FNNE]
64134
64209
+
Val
TAC
[ENA]
¡û
>W1710568728
FOTV01000001
Gammaproteobacteria
Marinobacter salarius DSM 26291 [FOTV]
434852
434927
+
Val
TAC
[ENA]
¡û
>W1710569178
FOUE01000003
Gammaproteobacteria
Marinobacter zhejiangensis [FOUE]
573598
573673
+
Val
TAC
[ENA]
¡û
>W1710760510
LIHP01000002
Gammaproteobacteria
Marinobacter sp. HL-58 [LIHP]
62611
62686
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK