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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45244 (22 seq.)
>A171000343
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
568742
568655
-
Leu
CAA
-
¡û
>A171002133
CP002590
Thermoproteota
Thermoproteus uzoniensis 768-20 [CP002590]
1664731
1664818
+
Leu
CAA
-
¡û
>A171002940
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
365505
365591
+
Leu
TAA
-
¡û
>A171002949
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1498379
1498466
+
Leu
CAA
-
¡û
>A171006240
CP012158
Thermoproteota
Pyrobaculum sp. WP30 [CP012158]
587432
587519
+
Leu
CAA
-
¡û
>A171007133
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
1423334
1423250
-
Leu
CAA
-
¡û
>A171007135
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
281175
281090
-
Leu
TAA
-
¡û
>WENV181229320
OFEJ01004538
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
2484
2397
-
Leu
CAA
[ENA]
¢þ
>WENV181404366
OGCA01000930
[OGCA] hot springs metagenome; Conch Spring, Yellowstone National Park, Wyoming, USA
2545
2632
+
Leu
CAA
[ENA]
¢þ
>WENV181405726
OGCE01001876
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
648
561
-
Leu
CAA
[ENA]
¢þ
>WENV181408573
OGCH01005764
[OGCH] hot springs metagenome; hot springs
1410
1323
-
Leu
CAA
[ENA]
¢þ
>At0221
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
883422
883335
-
Leu
CAA
[Ensembl]
¡û
>At0253
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
557567
557480
-
Leu
CAA
[Ensembl]
¡û
>At0269
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1531664
1531580
-
Leu
TAA
[Ensembl]
¡û
>At0315
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
603197
603113
-
Leu
CAA
[Ensembl]
¡û
>At0367
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1456990
1456906
-
Leu
CAA
[Ensembl]
¡û
>WENV170574048
FLYM01001574
[FLYM] hot springs metagenome; Sediment
87
1
-
Leu
CAA
[ENA]
¢þ
>W1911075121
NMUE01000038
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
13615
13702
+
Leu
CAA
[ENA]
¡û
>W1911075133
NMUF01000002
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
84026
84113
+
Leu
CAA
[ENA]
¡û
>ENV09004098
ADKH01001090
Hot springs metagenome ctg_1106445186506
1120
1207
+
Leu
CAA
[ENA]
¡û
>ENV09004108
ADKH01001604
Hot springs metagenome ctg_1106445186506
499
412
-
Leu
CAA
[ENA]
¡û
>W1610000630
ABIO01000004
Thermoproteota
Pyrobaculum neutrophilum V24Sta [ABIO]
36280
36193
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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