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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452463 (19 seq.)
>W1711467065
MJNC01000001
Gammaproteobacteria
Buchnera aphidicola (Myzus persicae) [MJNC]
66277
66203
-
Thr
TGT
[ENA]
¡û
>C171022195
CP013259
Gammaproteobacteria
Buchnera aphidicola [Diuraphis noxia] [CP013259]
49061
48987
-
Thr
TGT
-
¡û
>C001832
AE016826
Gammaproteobacteria
Buchnera aphidicola str. Bp [Baizongia pistaciae] [AE016826]
51021
50949
-
Thr
TGT
[Ensembl]
¡û
>WENV170000287
AEWW01004023
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
111
186
+
Thr
TGT
[ENA]
¢þ
>WENV170001598
AGFS01101911
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
111
186
+
Thr
TGT
[ENA]
¢þ
>WENV170002037
AGFT01080948
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
48
123
+
Thr
TGT
[ENA]
¢þ
>C181175410
CP029161
Gammaproteobacteria
Buchnera aphidicola [Melanaphis sacchari] LSU [CP029161]
577404
577476
+
Thr
TGT
-
¡û
>C191094380
CP032759
Gammaproteobacteria
Buchnera aphidicola [Rhopalosiphum maidis] BTI [CP032759]
87677
87749
+
Thr
TGT
-
¡û
>C191177562
CP040443
Gammaproteobacteria
Escherichia sp. E4742 [CP040443]
4258795
4258870
+
Thr
TGT
-
¡û
>W1911574658
PDHY01000022
Gammaproteobacteria
Escherichia sp. E4742 [PDHY]
46444
46369
-
Thr
TGT
[ENA]
¡û
>W1911824558
QZWI01000022
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
4213
4138
-
Thr
TGT
[ENA]
¡û
>C151003534
CP002697
Gammaproteobacteria
Buchnera aphidicola str. USDA [Myzus persicae] [CP002697]
49279
49205
-
Thr
TGT
[Ensembl]
¡û
>C151003566
CP002699
Gammaproteobacteria
Buchnera aphidicola str. W106 [Myzus persicae] [CP002699]
49280
49206
-
Thr
TGT
[Ensembl]
¡û
>C151003598
CP002701
Gammaproteobacteria
Buchnera aphidicola str. G002 [Myzus persicae] [CP002701]
49279
49205
-
Thr
TGT
[Ensembl]
¡û
>C151003630
CP002703
Gammaproteobacteria
Buchnera aphidicola str. F009 [Myzus persicae] [CP002703]
49278
49204
-
Thr
TGT
[Ensembl]
¡û
>C151046596
CP009253
Gammaproteobacteria
Buchnera aphidicola [Aphis glycines] BAg [CP009253]
47500
47428
-
Thr
TGT
-
¡û
>WENV11100645
AEWW01004023
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
111
186
+
Thr
TGT
[ENA]
¡û
>WENV11101670
AGFS01101911
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
111
186
+
Thr
TGT
[ENA]
¡û
>WENV11102109
AGFT01080948
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
48
123
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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