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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452489 (22 seq.)
>W08004304
ABHI01000004
Bacteroidota
Flavobacteriales bacterium ALC-1 [ABHI]
127340
127415
+
Lys
TTT
[ENA]
¡û
>W141276352
JADS01000016
Bacteroidota
Olleya sp. VCSA23 [JADS]
20019
20094
+
Lys
TTT
[ENA]
¡û
>W141276353
JADS01000016
Bacteroidota
Olleya sp. VCSA23 [JADS]
20160
20235
+
Lys
TTT
[ENA]
¡û
>W141276382
JADT01000005
Bacteroidota
Olleya sp. VCSM12 [JADT]
20310
20385
+
Lys
TTT
[ENA]
¡û
>W141276383
JADT01000005
Bacteroidota
Olleya sp. VCSM12 [JADT]
20451
20526
+
Lys
TTT
[ENA]
¡û
>WENV170783486
MAAC01017449
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
37440
37515
+
Lys
TTT
[ENA]
¢þ
>C181113337
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
2152691
2152618
-
Lys
TTT
-
¡û
>C181202815
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
3355948
3355875
-
Lys
TTT
-
¡û
>C181202816
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
3355807
3355734
-
Lys
TTT
-
¡û
>C191083421
CP031963
Bacteroidota
Aquimarina sp. BL5 [CP031963]
5337953
5337880
-
Lys
TTT
-
¡û
>C191083422
CP031963
Bacteroidota
Aquimarina sp. BL5 [CP031963]
5337799
5337726
-
Lys
TTT
-
¡û
>C191166143
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
143886
143959
+
Lys
TTT
-
¡û
>W1810157333
PJBW01000005
Bacteroidota
Olleya sp. 1-3 [PJBW]
20055
20128
+
Lys
TTT
[ENA]
¡û
>W1810157334
PJBW01000005
Bacteroidota
Olleya sp. 1-3 [PJBW]
20184
20257
+
Lys
TTT
[ENA]
¡û
>C151002324
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
27570
27645
+
Lys
TTT
[Ensembl]
¡û
>W1511505238
JXJP01000008
Bacteroidota
Psychroserpens mesophilus JCM 13413 [JXJP]
20328
20401
+
Lys
TTT
[ENA]
¡û
>W1610060588
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2543
2618
+
Lys
TTT
[ENA]
¡û
>W1610060589
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2684
2759
+
Lys
TTT
[ENA]
¡û
>W1710057843
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2543
2618
+
Lys
TTT
[ENA]
¡û
>W1710057844
BCBW01000053
Bacteroidota
Olleya sp. ITB9 [BCBW]
2684
2759
+
Lys
TTT
[ENA]
¡û
>W1710565812
FORM01000004
Bacteroidota
Olleya namhaensis [FORM]
284886
284811
-
Lys
TTT
[ENA]
¡û
>W1710565813
FORM01000004
Bacteroidota
Olleya namhaensis [FORM]
284757
284682
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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