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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45253 (8 seq.)
>A171003872
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
648439
648526
+
Leu
NAG
-
¡û
>A171003898
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
547925
547838
-
Leu
TAG
-
¡û
>A171003907
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
154558
154471
-
Leu
GAG
-
¡û
>A171004027
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
214357
214444
+
Leu
CAG
-
¡û
>A171004059
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1192132
1192045
-
Leu
GAG
-
¡û
>A171006643
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
420043
420130
+
Leu
TAG
-
¡û
>WENV170676736
LDZS01002068
[LDZS] terrestrial metagenome; oil reservoir sample K3
7912
7825
-
Leu
CAG
[ENA]
¢þ
>WENV170676744
LDZS01002107
[LDZS] terrestrial metagenome; oil reservoir sample K3
1274
1187
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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