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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45254 (27 seq.)
>A171000493
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1884399
1884315
-
Leu
CAA
-
¡û
>A171001878
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1959401
1959488
+
Leu
CAA
-
¡û
>A171002169
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1107862
1107949
+
Leu
CAA
-
¡û
>A171002316
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
481941
481854
-
Leu
CAA
-
¡û
>A171002570
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
845954
846041
+
Leu
CAA
-
¡û
>A171003263
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
617996
618083
+
Leu
CAA
-
¡û
>A171003306
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
492499
492586
+
Leu
CAA
-
¡û
>A171003383
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
138623
138536
-
Leu
CAA
-
¡û
>A171003886
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1846417
1846330
-
Leu
CAA
-
¡û
>A171004025
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
59921
60008
+
Leu
CAA
-
¡û
>A171004446
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1035523
1035610
+
Leu
CAA
-
¡û
>A171005866
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
363984
364071
+
Leu
CAA
-
¡û
>A171006372
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
646293
646206
-
Leu
CAA
-
¡û
>A171006475
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
2252801
2252888
+
Leu
CAA
-
¡û
>A171006576
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
669893
669980
+
Leu
CAA
-
¡û
>A171007523
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1262973
1262886
-
Leu
CAA
-
¡û
>At1819
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1413296
1413209
-
Leu
CAA
[Ensembl]
¡û
>At1848
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
337898
337811
-
Leu
CAA
[Ensembl]
¡û
>At1876
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
505823
505910
+
Leu
CAA
[Ensembl]
¡û
>At1926
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1201523
1201610
+
Leu
CAA
[Ensembl]
¡û
>WENV170676714
LDZS01002030
[LDZS] terrestrial metagenome; oil reservoir sample K3
75100
75013
-
Leu
CAA
[ENA]
¢þ
>W1910200336
FJMQ01000144
Euryarchaeota
Thermococcus litoralis [FJMQ]
20353
20266
-
Leu
CAA
[ENA]
¡û
>W1610000738
ABSF01000014
Euryarchaeota
Thermococcus barophilus MP [ABSF]
50804
50717
-
Leu
CAA
[ENA]
¡û
>W1610004914
AHVB01000022
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
20477
20390
-
Leu
CAA
[ENA]
¡û
>W1610005302
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
13655
13568
-
Leu
CAA
[ENA]
¡û
>W1610005570
AKID01000029
Euryarchaeota
Thermococcus sp. PK [AKID]
128
215
+
Leu
CAA
[ENA]
¡û
>W1610717919
LLYW01000008
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
70085
69998
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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