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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45255 (15 seq.)
>A171000707
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1402541
1402454
-
Ser
GGA
-
¡û
>A171001893
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
514448
514361
-
Ser
GGA
-
¡û
>A171003769
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
479037
479124
+
Ser
GGA
-
¡û
>A171003890
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1550325
1550238
-
Ser
GGA
-
¡û
>A171004041
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
871233
871320
+
Ser
GGA
-
¡û
>A171006355
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1339564
1339651
+
Ser
GGA
-
¡û
>A171006466
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
477317
477404
+
Ser
GGA
-
¡û
>A171006661
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1809074
1808987
-
Ser
GGA
-
¡û
>WENV170676739
LDZS01002075
[LDZS] terrestrial metagenome; oil reservoir sample K3
348
435
+
Ser
GGA
[ENA]
¢þ
>W1910200329
FJMQ01000125
Euryarchaeota
Thermococcus litoralis [FJMQ]
13350
13263
-
Ser
GGA
[ENA]
¡û
>W1610000703
ABSF01000003
Euryarchaeota
Thermococcus barophilus MP [ABSF]
72516
72603
+
Ser
GGA
[ENA]
¡û
>W1610004932
AHVB01000059
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
20643
20556
-
Ser
GGA
[ENA]
¡û
>W1610005581
AKID01000080
Euryarchaeota
Thermococcus sp. PK [AKID]
2179
2266
+
Ser
GGA
[ENA]
¡û
>W1610548892
JXCG01000013
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
28308
28395
+
Ser
GGA
[ENA]
¡û
>W1610613051
LGFJ01000046
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
348
435
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK