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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452566 (102 seq.)
>W1710785073
LJHO01000001
Alphaproteobacteria
Novosphingobium sp. AAP1 (LJHO)
904338
904263
-
Lys
TTT
[ENA]
¡û
>W1710866239
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 (LMHH)
452523
452598
+
Lys
TTT
[ENA]
¡û
>W1710913069
LNSD01000009
Alphaproteobacteria
Sphingopyxis sp. H057 (LNSD)
53038
52963
-
Lys
TTT
[ENA]
¡û
>W1710913115
LNSE01000009
Alphaproteobacteria
Sphingopyxis sp. H067 (LNSE)
53039
52964
-
Lys
TTT
[ENA]
¡û
>W1710913158
LNSF01000007
Alphaproteobacteria
Sphingopyxis sp. H071 (LNSF)
53039
52964
-
Lys
TTT
[ENA]
¡û
>W1710913210
LNSG01000009
Alphaproteobacteria
Sphingopyxis sp. H073 (LNSG)
53039
52964
-
Lys
TTT
[ENA]
¡û
>W1710913242
LNSH01000009
Alphaproteobacteria
Sphingopyxis sp. H081 (LNSH)
53040
52965
-
Lys
TTT
[ENA]
¡û
>W1710913290
LNSI01000007
Alphaproteobacteria
Sphingopyxis sp. H100 (LNSI)
53039
52964
-
Lys
TTT
[ENA]
¡û
>W1710913315
LNSJ01000001
Alphaproteobacteria
Sphingopyxis sp. H107 (LNSJ)
273626
273551
-
Lys
TTT
[ENA]
¡û
>W1711055191
LRUK01000006
Alphaproteobacteria
Sphingobium sp. AM (LRUK)
165866
165791
-
Lys
TTT
[ENA]
¡û
>W1711074904
LSJY01000137
Alphaproteobacteria
Sphingobium sp. CCH11-B1 (LSJY)
5881
5806
-
Lys
TTT
[ENA]
¡û
>W1711089876
LTAB01000005
Alphaproteobacteria
Sphingobium sp. 22B (LTAB)
182976
182901
-
Lys
TTT
[ENA]
¡û
>W1711250015
LYMJ01000003
Alphaproteobacteria
Sphingomonas paucimobilis (LYMJ)
252242
252317
+
Lys
TTT
[ENA]
¡û
>W1711387059
MEGD01000043
Alphaproteobacteria
Novosphingobium sp. SCN 66-18 (MEGD)
12867
12942
+
Lys
TTT
[ENA]
¡û
>W1711434837
MINO01000068
Alphaproteobacteria
Sphingobium phenoxybenzoativorans (MINO)
2872
2797
-
Lys
TTT
[ENA]
¡û
>W1712084230
NHRH01000151
Alphaproteobacteria
Sphingomonas sp. CDS-1 (NHRH)
3874
3949
+
Lys
TTT
[ENA]
¡û
>C171019727
CP013070
Alphaproteobacteria
Sphingobium indicum B90A (CP013070)
925822
925747
-
Lys
TTT
-
¡û
>C171108853
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH (CP020538)
457488
457563
+
Lys
TTT
-
¡û
>W131196347
ASTG01000009
Alphaproteobacteria
Sphingobium sp. YL23 [ASTG]
38786
38861
+
Lys
TTT
[ENA]
¡û
>W131224733
AUDA01000159
Alphaproteobacteria
Sphingobium chinhatense IP26 [AUDA]
46667
46742
+
Lys
TTT
[ENA]
¡û
>WENV180040789
LLBZ010014703
[LLBZ] soil metagenome; soil from tomato rhizosphere
14321
14248
-
Lys
TTT
[ENA]
¢þ
>WENV180311539
OBJT01367760
[OBJT] soil metagenome; soil
108
33
-
Lys
TTT
[ENA]
¢þ
>WENV180343647
OBLK01053988
[OBLK] soil metagenome; Clay
275
200
-
Lys
TTT
[ENA]
¢þ
>WENV180690581
OCZS010012451
[OCZS] soil metagenome; soil
1041
1116
+
Lys
TTT
[ENA]
¢þ
>W141076258
ATDO01000049
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
46624
46699
+
Lys
TTT
[ENA]
¡û
>W141078122
ATHO01000159
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
11525
11600
+
Lys
TTT
[ENA]
¡û
>W141090257
AUWY01000074
Alphaproteobacteria
Sphingobium ummariense RL-3 [AUWY]
84616
84691
+
Lys
TTT
[ENA]
¡û
>WENV181155248
OEID01047412
[OEID] soil metagenome; soil
73
148
+
Lys
TTT
[ENA]
¢þ
>WENV181167210
OEIU01014013
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2461
2536
+
Lys
TTT
[ENA]
¢þ
>WENV181169918
OEIV010014867
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
582
507
-
Lys
TTT
[ENA]
¢þ
>WENV181370386
OFQS01007402
[OFQS] freshwater metagenome; Freshwater Lake
821
896
+
Lys
TTT
[ENA]
¢þ
>W141231021
BATN01000018
Alphaproteobacteria
Sphingobium sp. KK22 [BATN]
58402
58327
-
Lys
TTT
[ENA]
¡û
>W141285075
JANF02000044
Alphaproteobacteria
Sphingobium lucknowense F2 [JANF]
559
484
-
Lys
TTT
[ENA]
¡û
>W141285106
JANF02000091
Alphaproteobacteria
Sphingobium lucknowense F2 [JANF]
62818
62743
-
Lys
TTT
[ENA]
¡û
>WENV183516285
OMKS01152862
[OMKS] sediment metagenome; hot spring sediment
289
214
-
Lys
TTT
[ENA]
¢þ
>WENV183726004
PJQF01058833
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
386
311
-
Lys
TTT
[ENA]
¢þ
>WENV183740811
PJUF01011445
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1423
1498
+
Lys
TTT
[ENA]
¢þ
>WENV170009874
APMI01004407
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
23231
23156
-
Lys
TTT
[ENA]
¢þ
>W141400565
JDRU02000907
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
4791
4866
+
Lys
TTT
[ENA]
¡û
>WENV170556086
CXWL01004693
[CXWL] groundwater metagenome; biofilm material
45106
45181
+
Lys
TTT
[ENA]
¢þ
>WENV170557407
CXWL01026081
[CXWL] groundwater metagenome; biofilm material
175
100
-
Lys
TTT
[ENA]
¢þ
>WENV170661957
JXWV01162906
[JXWV] soil metagenome; rice field; organic FYM Plot
79
154
+
Lys
TTT
[ENA]
¢þ
>W141484878
JFYY01000007
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
265353
265428
+
Lys
TTT
[ENA]
¡û
>W141484979
JFZA02000005
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
25811
25886
+
Lys
TTT
[ENA]
¡û
>C191003810
AP018664
Alphaproteobacteria
Sphingobium amiense DSM 16289 (AP018664)
777093
777018
-
Lys
TTT
-
¡û
>C191004258
AP018711
Alphaproteobacteria
Sphingosinicella microcystinivorans B9 (AP018711)
2966733
2966658
-
Lys
TTT
-
¡û
>C191170982
CP039695
Alphaproteobacteria
Novosphingobium sp. ABRDHK2 (CP039695)
1634751
1634676
-
Lys
TTT
-
¡û
>C191185567
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 (CP041016, CP041017)
1176478
1176403
-
Lys
TTT
-
¡û
>W141564463
JIAU01000004
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
107871
107796
-
Lys
TTT
[ENA]
¡û
>W141700110
JMIV01000005
Alphaproteobacteria
Erythrobacter sp. JL475 [JMIV]
88491
88566
+
Lys
TTT
[ENA]
¡û
>W141726150
JNAC01000075
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
52251
52326
+
Lys
TTT
[ENA]
¡û
>W1910649313
LXYF01000063
Alphaproteobacteria
Sphingobium sp. SA916 (LXYF)
1413
1488
+
Lys
TTT
[ENA]
¡û
>W1910889724
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 (NETV)
3072424
3072349
-
Lys
TTT
[ENA]
¡û
>W1911495394
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 (OBMU)
1374449
1374524
+
Lys
TTT
[ENA]
¡û
>W1810000462
BEWI01000031
Alphaproteobacteria
Sphingobium fuliginis OMI (BEWI)
906631
906706
+
Lys
TTT
[ENA]
¡û
>W1810463725
PZZU01000008
Alphaproteobacteria
Novosphingobium sp. GV064 (PZZU)
191347
191422
+
Lys
TTT
[ENA]
¡û
>W1810477316
QAOS01000008
Alphaproteobacteria
Novosphingobium sp. GV055 (QAOS)
191347
191422
+
Lys
TTT
[ENA]
¡û
>W1810513870
QBUA01000008
Alphaproteobacteria
Novosphingobium sp. GV061 (QBUA)
191347
191422
+
Lys
TTT
[ENA]
¡û
>W1810514083
QBUE01000008
Alphaproteobacteria
Novosphingobium sp. GV079 (QBUE)
191347
191422
+
Lys
TTT
[ENA]
¡û
>W1810514292
QBUI01000008
Alphaproteobacteria
Novosphingobium sp. GV027 (QBUI)
191347
191422
+
Lys
TTT
[ENA]
¡û
>W1810676610
QKMD01000002
Alphaproteobacteria
Novosphingobium sp. GV010 (QKMD)
282747
282672
-
Lys
TTT
[ENA]
¡û
>W1810677150
QKMM01000028
Alphaproteobacteria
Novosphingobium sp. B3058 49 (QKMM)
10962
11037
+
Lys
TTT
[ENA]
¡û
>W1810789408
QRGP01000001
Alphaproteobacteria
Sphingorhabdus sp. GY_G (QRGP)
827858
827783
-
Lys
TTT
[ENA]
¡û
>C151074570
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2
3725773
3725698
-
Lys
TTT
[Ensembl]
¡û
>C151082913
CP011452
Alphaproteobacteria
Altererythrobacter atlanticus 26DY36
2924639
2924714
+
Lys
TTT
-
¡û
>W1510019409
BBWU01000021
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
92451
92526
+
Lys
TTT
[ENA]
¡û
>W1510019745
BBXA01000027
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
139990
140065
+
Lys
TTT
[ENA]
¡û
>W10126764
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
194699
194624
-
Lys
TTT
[ENA]
¡û
>C10111667
AP010803
Alphaproteobacteria
Sphingobium japonicum UT26S
2194647
2194722
+
Lys
TTT
[Ensembl]
¡û
>C11119808
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1
655826
655751
-
Lys
TTT
[Ensembl]
¡û
>C11121294
AP012222
Alphaproteobacteria
Sphingobium sp. SYK-6
1168686
1168611
-
Lys
TTT
[Ensembl]
¡û
>W11134025
AEDK01000001
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
194699
194624
-
Lys
TTT
[ENA]
¡û
>W1511592103
LBIC01000003
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
40500
40425
-
Lys
TTT
[ENA]
¡û
>W1511646464
LECE01000038
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
1320
1395
+
Lys
TTT
[ENA]
¡û
>C161003376
CP005083
Alphaproteobacteria
Sphingobium sp. TKS
2443937
2443862
-
Lys
TTT
[Ensembl]
¡û
>C161003426
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205
1489938
1489863
-
Lys
TTT
[Ensembl]
¡û
>C161092710
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837
337889
337964
+
Lys
TTT
[Ensembl]
¡û
>W121071173
AJXQ01000146
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
25758
25683
-
Lys
TTT
[ENA]
¡û
>W1610072012
BCUN01000004
Alphaproteobacteria
Sphingobium amiense NBRC 102518 (BCUN)
176127
176202
+
Lys
TTT
[ENA]
¡û
>W1610076949
BCZD01000017
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 (BCZD)
151477
151402
-
Lys
TTT
[ENA]
¡û
>W1610077020
BCZE01000143
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 (BCZE)
4681
4606
-
Lys
TTT
[ENA]
¡û
>W1610550569
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L (JXQC)
3204774
3204849
+
Lys
TTT
[ENA]
¡û
>W1610609147
LFVX01000007
Alphaproteobacteria
Sphingobium sp. Ndbn-10 (LFVX)
58103
58028
-
Lys
TTT
[ENA]
¡û
>W1610648879
LJHO01000001
Alphaproteobacteria
Novosphingobium sp. AAP1 (LJHO)
904338
904263
-
Lys
TTT
[ENA]
¡û
>W1610728585
LMHH01000003
Alphaproteobacteria
Altererythrobacter sp. Root672 (LMHH)
452523
452598
+
Lys
TTT
[ENA]
¡û
>W1610771428
LNSD01000009
Alphaproteobacteria
Sphingopyxis sp. H057 (LNSD)
53038
52963
-
Lys
TTT
[ENA]
¡û
>W1610771474
LNSE01000009
Alphaproteobacteria
Sphingopyxis sp. H067 (LNSE)
53039
52964
-
Lys
TTT
[ENA]
¡û
>W1610771517
LNSF01000007
Alphaproteobacteria
Sphingopyxis sp. H071 (LNSF)
53039
52964
-
Lys
TTT
[ENA]
¡û
>W1610771569
LNSG01000009
Alphaproteobacteria
Sphingopyxis sp. H073 (LNSG)
53039
52964
-
Lys
TTT
[ENA]
¡û
>W1610771601
LNSH01000009
Alphaproteobacteria
Sphingopyxis sp. H081 (LNSH)
53040
52965
-
Lys
TTT
[ENA]
¡û
>W1610771649
LNSI01000007
Alphaproteobacteria
Sphingopyxis sp. H100 (LNSI)
53039
52964
-
Lys
TTT
[ENA]
¡û
>W1610771674
LNSJ01000001
Alphaproteobacteria
Sphingopyxis sp. H107 (LNSJ)
273626
273551
-
Lys
TTT
[ENA]
¡û
>W1610896237
LRUK01000006
Alphaproteobacteria
Sphingobium sp. AM (LRUK)
165866
165791
-
Lys
TTT
[ENA]
¡û
>W1610914209
LSJY01000137
Alphaproteobacteria
Sphingobium sp. CCH11-B1 (LSJY)
5881
5806
-
Lys
TTT
[ENA]
¡û
>W1610924220
LTAB01000005
Alphaproteobacteria
Sphingobium sp. 22B (LTAB)
182976
182901
-
Lys
TTT
[ENA]
¡û
>W1611016897
LYMJ01000003
Alphaproteobacteria
Sphingomonas paucimobilis (LYMJ)
252242
252317
+
Lys
TTT
[ENA]
¡û
>W1710069214
BCUN01000004
Alphaproteobacteria
Sphingobium amiense NBRC 102518 (BCUN)
176127
176202
+
Lys
TTT
[ENA]
¡û
>W1710074638
BCZD01000017
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 (BCZD)
151477
151402
-
Lys
TTT
[ENA]
¡û
>W1710074709
BCZE01000143
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 (BCZE)
4681
4606
-
Lys
TTT
[ENA]
¡û
>W1710660332
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L (JXQC)
3204774
3204849
+
Lys
TTT
[ENA]
¡û
>W1710730434
LFVX01000007
Alphaproteobacteria
Sphingobium sp. Ndbn-10 (LFVX)
58103
58028
-
Lys
TTT
[ENA]
¡û
>W1710743488
LGVA01000050
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 (LGVA)
21502
21427
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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