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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45257 (96 seq.)
>A171004375
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2148827
2148742
-
Leu
GAG
-
¡û
>A171004376
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2148625
2148539
-
Leu
GAG
-
¡û
>A171004781
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
3540484
3540571
+
Leu
GAG
-
¡û
>A171004782
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
3540664
3540751
+
Leu
GAG
-
¡û
>A171004834
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
3518634
3518721
+
Leu
GAG
-
¡û
>A171004835
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
3518814
3518901
+
Leu
GAG
-
¡û
>A171004888
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3842185
3842272
+
Leu
GAG
-
¡û
>A171004889
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3842365
3842452
+
Leu
GAG
-
¡û
>A171004956
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
3128457
3128368
-
Leu
GAG
-
¡û
>A171005006
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
3083155
3083066
-
Leu
GAG
-
¡û
>A171005058
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3162439
3162350
-
Leu
GAG
-
¡û
>A171005100
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
3221733
3221822
+
Leu
GAG
-
¡û
>A171005149
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2348038
2348127
+
Leu
GAG
-
¡û
>A171005328
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3441991
3441906
-
Leu
GAG
-
¡û
>A171005329
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3441788
3441703
-
Leu
GAG
-
¡û
>A171005442
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1072487
1072402
-
Leu
GAG
-
¡û
>A171005443
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1072286
1072200
-
Leu
GAG
-
¡û
>A171005499
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1052517
1052430
-
Leu
GAG
-
¡û
>A171005500
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1052315
1052230
-
Leu
GAG
-
¡û
>A171005514
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1098662
1098747
+
Leu
GAG
-
¡û
>A171005515
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1098878
1098964
+
Leu
GAG
-
¡û
>A171005589
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3405907
3405822
-
Leu
GAG
-
¡û
>A171005590
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3405705
3405619
-
Leu
GAG
-
¡û
>A171005638
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3333002
3332917
-
Leu
GAG
-
¡û
>A171005639
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3332800
3332714
-
Leu
GAG
-
¡û
>At1378
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
1320020
1320107
+
Leu
GAG
[Ensembl]
¡û
>At1379
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
1320214
1320298
+
Leu
GAG
[Ensembl]
¡û
>At1466
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
92160
92076
-
Leu
GAG
[Ensembl]
¡û
>At1467
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
92377
92293
-
Leu
GAG
[Ensembl]
¡û
>At1521
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2560706
2560790
+
Leu
GAG
[Ensembl]
¡û
>WENV170644821
JMBW01113069
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
5
93
+
Leu
GAG
[ENA]
¢þ
>W1910569235
JJOR01000060
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
24103
24192
+
Leu
GAG
[ENA]
¡û
>W1910569324
JJOS01000118
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
1854
1765
-
Leu
GAG
[ENA]
¡û
>W1910569361
JJOT01000062
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
87008
87097
+
Leu
GAG
[ENA]
¡û
>W1910569412
JJOU01000152
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
45902
45991
+
Leu
GAG
[ENA]
¡û
>W1910569682
JJPA01000013
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
229
140
-
Leu
GAG
[ENA]
¡û
>W1910569772
JJPB01000120
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
95499
95588
+
Leu
GAG
[ENA]
¡û
>W1910569808
JJPC01000050
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
3196
3285
+
Leu
GAG
[ENA]
¡û
>W1910569856
JJPD01000110
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
77157
77246
+
Leu
GAG
[ENA]
¡û
>W1910569933
JJPE01000152
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
72744
72833
+
Leu
GAG
[ENA]
¡û
>W1910569963
JJPF01000065
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
77157
77246
+
Leu
GAG
[ENA]
¡û
>W1910570020
JJPG01000094
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
34144
34233
+
Leu
GAG
[ENA]
¡û
>W1910570043
JJPH01000002
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
77157
77246
+
Leu
GAG
[ENA]
¡û
>W1910570135
JJPI01000124
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
63242
63331
+
Leu
GAG
[ENA]
¡û
>W1910570158
JJPJ01000044
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
24070
24159
+
Leu
GAG
[ENA]
¡û
>W1910570222
JJPK01000065
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
288
199
-
Leu
GAG
[ENA]
¡û
>W1910570261
JJPL01000062
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
30045
30134
+
Leu
GAG
[ENA]
¡û
>W1910570302
JJPM01000034
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
1739
1828
+
Leu
GAG
[ENA]
¡û
>W1910570391
JJPN01000154
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
32526
32615
+
Leu
GAG
[ENA]
¡û
>W1910570422
JJPO01000087
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
52460
52549
+
Leu
GAG
[ENA]
¡û
>W1910570479
JJPP01000124
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
24091
24180
+
Leu
GAG
[ENA]
¡û
>W1910570547
JJPQ01000181
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
49607
49518
-
Leu
GAG
[ENA]
¡û
>W1910570563
JJPR01000047
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
48885
48974
+
Leu
GAG
[ENA]
¡û
>W1910570641
JJPS01000207
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
35422
35511
+
Leu
GAG
[ENA]
¡û
>W1910570657
JJPT01000029
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
24049
24138
+
Leu
GAG
[ENA]
¡û
>W1910570745
JJPU01000203
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
23953
24040
+
Leu
GAG
[ENA]
¡û
>W1910570746
JJPU01000203
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
24131
24220
+
Leu
GAG
[ENA]
¡û
>W1910570792
JJPV01000126
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
24107
24196
+
Leu
GAG
[ENA]
¡û
>W1910570811
JJPW01000013
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
288
199
-
Leu
GAG
[ENA]
¡û
>W1910570859
JJPX01000029
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
43068
43157
+
Leu
GAG
[ENA]
¡û
>W1910570941
JJPY01000099
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
57777
57866
+
Leu
GAG
[ENA]
¡û
>W1910570990
JJPZ01000135
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
57830
57919
+
Leu
GAG
[ENA]
¡û
>W1910571034
JJQA01000096
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
289
200
-
Leu
GAG
[ENA]
¡û
>W1910571068
JJQB01000036
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
289
200
-
Leu
GAG
[ENA]
¡û
>W1910571136
JJQC01000112
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
289
200
-
Leu
GAG
[ENA]
¡û
>W1910571163
JJQD01000052
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
29587
29676
+
Leu
GAG
[ENA]
¡û
>W1910571216
JJQE01000077
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
77157
77246
+
Leu
GAG
[ENA]
¡û
>W1910571295
JJQF01000121
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
293
206
-
Leu
GAG
[ENA]
¡û
>W1910571296
JJQF01000121
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
114
27
-
Leu
GAG
[ENA]
¡û
>W1910571341
JJQG01000123
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
8589
8678
+
Leu
GAG
[ENA]
¡û
>W1910571406
JJQH01000205
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
291
202
-
Leu
GAG
[ENA]
¡û
>W1910571440
JJQI01000072
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
291
202
-
Leu
GAG
[ENA]
¡û
>W1910571495
JJQJ01000158
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
271
182
-
Leu
GAG
[ENA]
¡û
>W1910571536
JJQK01000154
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
29527
29616
+
Leu
GAG
[ENA]
¡û
>W1910571629
JJQM01000052
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
1851
1762
-
Leu
GAG
[ENA]
¡û
>W1910571699
JJQN01000065
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
29985
30074
+
Leu
GAG
[ENA]
¡û
>W1910571779
JJQO01000315
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
1851
1762
-
Leu
GAG
[ENA]
¡û
>W1910571848
JJQP01000332
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
36402
36491
+
Leu
GAG
[ENA]
¡û
>W1910571860
JJQQ01000033
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
295
206
-
Leu
GAG
[ENA]
¡û
>W1910571923
JJQR01000064
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
1851
1762
-
Leu
GAG
[ENA]
¡û
>W1910571986
JJQS01000073
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
24116
24205
+
Leu
GAG
[ENA]
¡û
>W1910572040
JJQT01000216
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
1613
1702
+
Leu
GAG
[ENA]
¡û
>W1910572056
JJQU01000039
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
467
380
-
Leu
GAG
[ENA]
¡û
>W1910572057
JJQU01000039
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
289
200
-
Leu
GAG
[ENA]
¡û
>W1910572152
JJQV01000149
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
24127
24216
+
Leu
GAG
[ENA]
¡û
>W1910572180
JJQW01000091
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
1851
1762
-
Leu
GAG
[ENA]
¡û
>W1910572307
JJQZ01000054
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
24120
24209
+
Leu
GAG
[ENA]
¡û
>W1910572369
JJRA01000063
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
24121
24210
+
Leu
GAG
[ENA]
¡û
>W1910572433
JJRB01000115
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
1851
1762
-
Leu
GAG
[ENA]
¡û
>W1910635249
LMVP01000168
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
28243
28328
+
Leu
GAG
[ENA]
¡û
>W1910635250
LMVP01000168
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
28438
28523
+
Leu
GAG
[ENA]
¡û
>W1610000049
AAAR03000029
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
34276
34189
-
Leu
GAG
[ENA]
¡û
>W1610000050
AAAR03000029
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
34060
33974
-
Leu
GAG
[ENA]
¡û
>W1610045116
BBBC01000058
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
24166
24255
+
Leu
GAG
[ENA]
¡û
>W1610048619
BBEF01000092
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
9052
9139
+
Leu
GAG
[ENA]
¡û
>W1610048620
BBEF01000092
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
9254
9340
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK