This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45262 (34 seq.)
>A171002749
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
2366276
2366362
+
Leu
TAG
-
¡û
>A171004372
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2597713
2597626
-
Leu
TAG
-
¡û
>A171004529
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2762537
2762449
-
Leu
TAG
-
¡û
>A171004579
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1268053
1268141
+
Leu
TAG
-
¡û
>A171004656
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
720699
720613
-
Leu
TAG
-
¡û
>A171004708
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
689753
689667
-
Leu
TAG
-
¡û
>A171005215
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
3544327
3544413
+
Leu
TAG
-
¡û
>A171005422
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3824181
3824094
-
Leu
TAG
-
¡û
>A171005478
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3819957
3819870
-
Leu
TAG
-
¡û
>A171005552
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
724075
723988
-
Leu
TAG
-
¡û
>A171005564
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
753469
753556
+
Leu
TAG
-
¡û
>A171005649
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2332282
2332195
-
Leu
TAG
-
¡û
>WENV170008259
AMZC01006369
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
96
8
-
Leu
TAG
[ENA]
¢þ
>At1425
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5064696
5064612
-
Leu
TAG
[Ensembl]
¡û
>At1435
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
466965
467049
+
Leu
TAG
[Ensembl]
¡û
>WENV170687871
LFRM01214605
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
41546
41634
+
Leu
TAG
[ENA]
¢þ
>W1910230884
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
126901
126989
+
Leu
TAG
[ENA]
¡û
>W1910569472
JJOV01000087
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
21150
21064
-
Leu
TAG
[ENA]
¡û
>W1910570057
JJPH01000039
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
16280
16195
-
Leu
TAG
[ENA]
¡û
>W1910570094
JJPI01000012
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
4114
4199
+
Leu
TAG
[ENA]
¡û
>W1910570194
JJPK01000008
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
20751
20836
+
Leu
TAG
[ENA]
¡û
>W1910570740
JJPU01000168
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
14031
14116
+
Leu
TAG
[ENA]
¡û
>W1910571070
JJQB01000040
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
6347
6432
+
Leu
TAG
[ENA]
¡û
>W1910571148
JJQC01000166
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
4146
4231
+
Leu
TAG
[ENA]
¡û
>W1910571157
JJQD01000024
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
4227
4312
+
Leu
TAG
[ENA]
¡û
>W1910571257
JJQF01000032
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
4149
4234
+
Leu
TAG
[ENA]
¡û
>W1910572086
JJQU01000138
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
4176
4261
+
Leu
TAG
[ENA]
¡û
>W1910635259
LMVP01000445
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
5286
5199
-
Leu
TAG
[ENA]
¡û
>W1910655371
LZPK01000006
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
30840
30927
+
Leu
TAG
[ENA]
¡û
>W1610000019
AAAR03000003
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
99817
99730
-
Leu
TAG
[ENA]
¡û
>W1610046895
BBCW01000025
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
585
671
+
Leu
TAG
[ENA]
¡û
>W1610048615
BBEF01000069
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
16318
16405
+
Leu
TAG
[ENA]
¡û
>W1610605107
LFRP01000025
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
41546
41634
+
Leu
TAG
[ENA]
¡û
>W1610670266
LKAZ01000053
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
104217
104303
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK