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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452693 (44 seq.)
>W1710792796
LJOP01000068
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
15003
15075
+
Ala
GGC
[ENA]
¡û
>W1710792840
LJOQ01000062
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
11266
11338
+
Ala
GGC
[ENA]
¡û
>W1710792872
LJOS01000013
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
66978
67050
+
Ala
GGC
[ENA]
¡û
>W1710792928
LJOU01000096
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
5461
5533
+
Ala
GGC
[ENA]
¡û
>W1710792965
LJOV01000284
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
5819
5747
-
Ala
GGC
[ENA]
¡û
>W1710792983
LJOW01000001
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
6177
6105
-
Ala
GGC
[ENA]
¡û
>W1710793062
LJOX01000019
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
38672
38600
-
Ala
GGC
[ENA]
¡û
>W1710793102
LJOY01000009
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
63856
63784
-
Ala
GGC
[ENA]
¡û
>W1711081293
LSSA01000408
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
8413
8485
+
Ala
GGC
[ENA]
¡û
>W1711092442
LTEC01000014
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
48668
48740
+
Ala
GGC
[ENA]
¡û
>W131110105
APIY01000210
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
11721
11649
-
Ala
GGC
[ENA]
¡û
>W131110135
APIZ01000147
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
3044
3116
+
Ala
GGC
[ENA]
¡û
>w002292
AAAY02000088
Cyanobacteriota
Nostoc punctiforme [AAAY]
14312
14237
-
Ala
GGC
[ENA]
¡û
>W141221420
AZYY01000149
Cyanobacteriota
Aphanizomenon flos-aquae NIES-81 [AZYY]
14186
14258
+
Ala
GGC
[ENA]
¡û
>C08006931
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5482043
5481971
-
Ala
GGC
[Ensembl]
¡û
>WENV171003095
NNBT01000745
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
696
770
+
Ala
GGC
[ENA]
¢þ
>WENV171003467
NNBU01000047
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
17238
17310
+
Ala
GGC
[ENA]
¢þ
>WENV171003689
NNBV01000194
[NNBV] plant metagenome; symbiotic tissue sample KVS11
27933
28005
+
Ala
GGC
[ENA]
¢þ
>C181105237
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
6123783
6123857
+
Ala
GGC
-
¡û
>C181137708
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
848768
848840
+
Ala
GGC
-
¡û
>C181137811
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
5354367
5354441
+
Ala
GGC
-
¡û
>C191083041
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
3981924
3981996
+
Ala
GGC
-
¡û
>W1910020520
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
6561524
6561596
+
Ala
GGC
[ENA]
¡û
>W1910175571
BJCF01000084
Cyanobacteriota
Dolichospermum planctonicum NIES-80 [BJCF]
2939
3011
+
Ala
GGC
[ENA]
¡û
>W1910646652
LWSY01000110
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
234599
234671
+
Ala
GGC
[ENA]
¡û
>W1910792695
MRBZ01000180
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
3555
3483
-
Ala
GGC
[ENA]
¡û
>W1911118702
NOLI01000193
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
10940
11012
+
Ala
GGC
[ENA]
¡û
>W1911118755
NOLJ01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
239280
239354
+
Ala
GGC
[ENA]
¡û
>W1911118798
NOLK01000007
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
64915
64843
-
Ala
GGC
[ENA]
¡û
>C151004183
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
3037538
3037466
-
Ala
GGC
[Ensembl]
¡û
>C151082980
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
833584
833512
-
Ala
GGC
-
¡û
>W1511364892
JSDP01000055
Cyanobacteriota
Aphanizomenon flos-aquae 2012/KM1/D3 [JSDP]
6633
6561
-
Ala
GGC
[ENA]
¡û
>C131004492
CP003594
Cyanobacteriota
Synechococcus sp. PCC 7502 [CP003594]
2286958
2286886
-
Ala
GGC
[Ensembl]
¡û
>C131004932
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
5083022
5082950
-
Ala
GGC
[Ensembl]
¡û
>W1610656721
LJOP01000068
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
15003
15075
+
Ala
GGC
[ENA]
¡û
>W1610656765
LJOQ01000062
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
11266
11338
+
Ala
GGC
[ENA]
¡û
>W1610656836
LJOS01000013
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
66978
67050
+
Ala
GGC
[ENA]
¡û
>W1610656864
LJOT01000011
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
31134
31209
+
Ala
GGC
[ENA]
¡û
>W1610656932
LJOU01000096
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
5461
5533
+
Ala
GGC
[ENA]
¡û
>W1610656969
LJOV01000284
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
5819
5747
-
Ala
GGC
[ENA]
¡û
>W1610656987
LJOW01000001
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
6177
6105
-
Ala
GGC
[ENA]
¡û
>W1610657066
LJOX01000019
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
38672
38600
-
Ala
GGC
[ENA]
¡û
>W1610657106
LJOY01000009
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
63856
63784
-
Ala
GGC
[ENA]
¡û
>W1610926480
LTEC01000014
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
48668
48740
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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