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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452695 (108 seq.)
>W1710784248
LJGU01000135
Actinomycetota
Streptomyces oceani [LJGU]
74335
74407
+
Val
GAC
[ENA]
¡û
>W1711008432
LQPZ01000008
Actinomycetota
Mycolicibacillus trivialis triviale [LQPZ]
10214
10140
-
Val
GAC
[ENA]
¡û
>W1711069514
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
432752
432678
-
Val
GAC
[ENA]
¡û
>W1711080636
LSRE01000034
Actinomycetota
Tsukamurella pseudospumae [LSRE]
218383
218457
+
Val
GAC
[ENA]
¡û
>W1711080778
LSRH01000012
Actinomycetota
Tsukamurella pulmonis [LSRH]
337091
337017
-
Val
GAC
[ENA]
¡û
>W1711080834
LSRI01000022
Actinomycetota
Tsukamurella pulmonis [LSRI]
375877
375803
-
Val
GAC
[ENA]
¡û
>W1711094351
LTFV01000066
Actinomycetota
Corynebacterium sp. HMSC078A10 [LTFV]
81994
82066
+
Val
GAC
[ENA]
¡û
>W1711094399
LTFW01000086
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
87598
87672
+
Val
GAC
[ENA]
¡û
>W1711094978
LTGK01000079
Actinomycetota
Corynebacterium sp. HMSC068H04 HMSC068H04 [LTGK]
303
231
-
Val
GAC
[ENA]
¡û
>W1711095273
LTGR01000006
Actinomycetota
Corynebacterium sp. HMSC062A03 [LTGR]
105681
105607
-
Val
GAC
[ENA]
¡û
>W1711096002
LTHJ01000040
Actinomycetota
Corynebacterium sp. HMSC065D07 [LTHJ]
81410
81484
+
Val
GAC
[ENA]
¡û
>W1711098658
LTJU01000017
Actinomycetota
Corynebacterium sp. HMSC055A01 [LTJU]
90
162
+
Val
GAC
[ENA]
¡û
>W1711099009
LTKC01000067
Actinomycetota
Corynebacterium sp. HMSC072A04 [LTKC]
411
483
+
Val
GAC
[ENA]
¡û
>W1711099364
LTKK01000046
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
275
201
-
Val
GAC
[ENA]
¡û
>W1711099722
LTKS01000046
Actinomycetota
Corynebacterium sp. HMSC070E08 [LTKS]
369
295
-
Val
GAC
[ENA]
¡û
>W1711103448
LTOS01000027
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
37243
37169
-
Val
GAC
[ENA]
¡û
>W1711106047
LTRK01000070
Actinomycetota
Corynebacterium sp. HMSC036D03 [LTRK]
85
159
+
Val
GAC
[ENA]
¡û
>W1711106096
LTRL01000055
Actinomycetota
Corynebacterium sp. HMSC036D02 [LTRL]
144
70
-
Val
GAC
[ENA]
¡û
>W1711108140
LTTL01000006
Actinomycetota
Corynebacterium sp. HMSC034H07 HMSC034H07 [LTTL]
74
2
-
Val
GAC
[ENA]
¡û
>W1711108706
LTTZ01000044
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
139
65
-
Val
GAC
[ENA]
¡û
>W1711109783
LTUY01000040
Actinomycetota
Corynebacterium sp. HMSC059E07 HMSC059E07 [LTUY]
82262
82334
+
Val
GAC
[ENA]
¡û
>W1711110988
LTWA01000095
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
149
77
-
Val
GAC
[ENA]
¡û
>W1711114937
LTZS01000022
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
37189
37115
-
Val
GAC
[ENA]
¡û
>W1711185988
LWNV01000050
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
25572
25646
+
Val
GAC
[ENA]
¡û
>W1711185991
LWNV01000050
Actinomycetota
Corynebacterium sp. HMSC08C04 [LWNV]
25893
25967
+
Val
GAC
[ENA]
¡û
>W1711186397
LWOE01000042
Actinomycetota
Corynebacterium sp. HMSC06D04 [LWOE]
283
357
+
Val
GAC
[ENA]
¡û
>W1711186689
LWOK01000031
Actinomycetota
Corynebacterium sp. HMSC05D03 [LWOK]
83297
83371
+
Val
GAC
[ENA]
¡û
>W1711666077
MRBH01000080
Actinomycetota
Mycobacterium tuberculosis M13 [MRBH]
7725
7799
+
Val
GAC
[ENA]
¡û
>W1711724000
MTPT01000002
Actinomycetota
Corynebacterium amycolatum [MTPT]
90272
90346
+
Val
GAC
[ENA]
¡û
>W1711748998
MUME01000138
Actinomycetota
Streptomyces thermovulgaris [MUME]
1206
1134
-
Val
GAC
[ENA]
¡û
>W1711966691
NCXO01000008
Actinomycetota
Mycolicibacillus koreensis koreense [NCXO]
5872
5798
-
Val
GAC
[ENA]
¡û
>W1712077672
NGUZ01000001
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
373696
373770
+
Val
GAC
[ENA]
¡û
>W1712077675
NGUZ01000001
Actinomycetota
Corynebacterium kefirresidentii OG2 [NGUZ]
374010
374084
+
Val
GAC
[ENA]
¡û
>C171002001
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
1134551
1134479
-
Val
GAC
-
¡û
>C171002004
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
1134245
1134173
-
Val
GAC
-
¡û
>W131044921
AMRA01000047
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [AMRA]
2170
2096
-
Val
GAC
[ENA]
¡û
>W131165689
ARBU01000001
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [ARBU]
2847
2773
-
Val
GAC
[ENA]
¡û
>W131240888
BAOQ01000006
Actinomycetota
Gordonia paraffinivorans NBRC 108238 [BAOQ]
46516
46590
+
Val
GAC
[ENA]
¡û
>WENV180557045
OCJU01004360
[OCJU] human gut metagenome; Infant 2 DOL 12 skin
148
220
+
Val
GAC
[ENA]
¢þ
>WENV180711437
ODFN01010332
[ODFN] human metagenome; G_DNA_Anterior nares
105
177
+
Val
GAC
[ENA]
¢þ
>WENV180749639
ODHQ01005138
[ODHQ] human metagenome; G_DNA_Anterior nares
57
129
+
Val
GAC
[ENA]
¢þ
>WENV180765694
ODIC01032032
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
102
174
+
Val
GAC
[ENA]
¢þ
>WENV180766207
ODIE01000006
[ODIE] human metagenome; G_DNA_Anterior nares
6641
6569
-
Val
GAC
[ENA]
¢þ
>WENV180766210
ODIE01000006
[ODIE] human metagenome; G_DNA_Anterior nares
6327
6255
-
Val
GAC
[ENA]
¢þ
>WENV180844743
ODKO01001655
[ODKO] human metagenome; G_DNA_Anterior nares
1099
1027
-
Val
GAC
[ENA]
¢þ
>WENV180914492
ODSX01001088
[ODSX] human metagenome; G_DNA_Anterior nares
209
137
-
Val
GAC
[ENA]
¢þ
>WENV181012992
ODWL01006715
[ODWL] human metagenome; G_DNA_Anterior nares
102
174
+
Val
GAC
[ENA]
¢þ
>WENV181025093
ODWY01006361
[ODWY] human metagenome; G_DNA_Anterior nares
234
162
-
Val
GAC
[ENA]
¢þ
>WENV181040349
ODXR01000102
[ODXR] human metagenome; G_DNA_Anterior nares
369
297
-
Val
GAC
[ENA]
¢þ
>WENV181131702
OEGD01004713
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
710
638
-
Val
GAC
[ENA]
¢þ
>WENV181131705
OEGD01004713
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
396
324
-
Val
GAC
[ENA]
¢þ
>WENV181326266
OFLL01000032
[OFLL] metagenome; faeces
80363
80435
+
Val
GAC
[ENA]
¢þ
>W141154930
AXLO01000004
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
233597
233523
-
Val
GAC
[ENA]
¡û
>W141154933
AXLO01000004
Actinomycetota
Corynebacterium sp. KPL1998 [AXLO]
233283
233209
-
Val
GAC
[ENA]
¡û
>W141155134
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
230326
230252
-
Val
GAC
[ENA]
¡û
>W141155137
AXLS01000002
Actinomycetota
Corynebacterium sp. KPL1986 [AXLS]
230012
229938
-
Val
GAC
[ENA]
¡û
>W141155279
AXLV01000005
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
281864
281938
+
Val
GAC
[ENA]
¡û
>W141155282
AXLV01000005
Actinomycetota
Corynebacterium sp. KPL1857 [AXLV]
282178
282252
+
Val
GAC
[ENA]
¡û
>W141155331
AXLW01000007
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
222573
222499
-
Val
GAC
[ENA]
¡û
>W141155334
AXLW01000007
Actinomycetota
Corynebacterium sp. KPL1856 [AXLW]
222259
222185
-
Val
GAC
[ENA]
¡û
>W141155425
AXLY01000006
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
150712
150638
-
Val
GAC
[ENA]
¡û
>W141155428
AXLY01000006
Actinomycetota
Corynebacterium sp. KPL1824 [AXLY]
150398
150324
-
Val
GAC
[ENA]
¡û
>W141155611
AXMC01000004
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
62093
62167
+
Val
GAC
[ENA]
¡û
>W141155614
AXMC01000004
Actinomycetota
Corynebacterium sp. KPL1814 [AXMC]
62407
62481
+
Val
GAC
[ENA]
¡û
>WENV181813459
OGTC01001647
[OGTC] human gut metagenome; fecal sample 2 from infant 9
96
168
+
Val
GAC
[ENA]
¢þ
>W141243916
CAJY01000029
Actinomycetota
Tsukamurella sp. 1534 [CAJY]
29631
29557
-
Val
GAC
[ENA]
¡û
>WENV182629473
OJKS01007278
[OJKS] metagenome; surface
184
256
+
Val
GAC
[ENA]
¢þ
>WENV182629785
OJKU01006417
[OJKU] metagenome; surface
105
177
+
Val
GAC
[ENA]
¢þ
>WENV182642766
OJLP01000297
[OJLP] metagenome; surface
163
91
-
Val
GAC
[ENA]
¢þ
>WENV182828892
OKDK01000690
[OKDK] human gut metagenome; human gut
1407
1479
+
Val
GAC
[ENA]
¢þ
>W09109097
ABTV01000014
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
113580
113506
-
Val
GAC
[ENA]
¡û
>W09127857
ACLH01000082
Actinomycetota
Corynebacterium aurimucosum ATCC 700975 [ACLH]
11637
11563
-
Val
GAC
[ENA]
¡û
>C181035848
CP019066
Actinomycetota
Tsukamurella tyrosinosolvens MH1 [CP019066]
2114740
2114666
-
Val
GAC
-
¡û
>C181214806
LS483460
Actinomycetota
Corynebacterium minutissimum NCTC10288 [LS483460]
1152582
1152654
+
Val
GAC
-
¡û
>C181226832
LT906483
Actinomycetota
Mycolicibacterium thermoresistibile NCTC10409 [LT906483]
2837146
2837220
+
Val
GAC
-
¡û
>C191189825
LR026975
Actinomycetota
Mycolicibacterium hassiacum DSM 44199 [LR026975]
2433318
2433390
+
Val
GAC
-
¡û
>C191193472
LR131273
Actinomycetota
Tsukamurella paurometabola NCTC10741 [LR131273]
4160029
4160103
+
Val
GAC
-
¡û
>C191207688
LR134339
Actinomycetota
Corynebacterium minutissimum NCTC10285 [LR134339]
1778832
1778760
-
Val
GAC
-
¡û
>C191210969
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
1392563
1392491
-
Val
GAC
-
¡û
>C191210972
LR134408
Actinomycetota
Corynebacterium segmentosum NCTC934 [LR134408]
1392249
1392177
-
Val
GAC
-
¡û
>W1910611731
LFLR01000011
Actinomycetota
Gordonia paraffinivorans MTZ 041 [LFLR]
101836
101910
+
Val
GAC
[ENA]
¡û
>W1910611756
LFLR01000072
Actinomycetota
Gordonia paraffinivorans MTZ 041 [LFLR]
211
137
-
Val
GAC
[ENA]
¡û
>W1911596653
PNHI01000007
Actinomycetota
Corynebacterium aurimucosum UMB1300 [PNHI]
30658
30586
-
Val
GAC
[ENA]
¡û
>W1911717756
QQQF01000251
Actinomycetota
Tsukamurella pulmonis PW1004 [QQQF]
111966
112038
+
Val
GAC
[ENA]
¡û
>W1810187540
PKHR01000001
Actinomycetota
Corynebacterium aurimucosum UMB0043 [PKHR]
605267
605339
+
Val
GAC
[ENA]
¡û
>W1810760477
QPKD01000076
Actinomycetota
Tsukamurella tyrosinosolvens PW899 [QPKD]
23780
23706
-
Val
GAC
[ENA]
¡û
>ENV09003411
ADGO01033164
Compost metagenome contig00001
205
279
+
Val
GAC
[ENA]
¡û
>W10127206
AEED01000110
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
13790
13716
-
Val
GAC
[ENA]
¡û
>W10127209
AEED01000110
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
13479
13405
-
Val
GAC
[ENA]
¡û
>C10107084
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
2416479
2416405
-
Val
GAC
[Ensembl]
¡û
>C10113704
CP001966
Actinomycetota
Tsukamurella paurometabola DSM 20162 [CP001966]
1995139
1995065
-
Val
GAC
[Ensembl]
¡û
>W11134694
AEED01000110
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
13790
13716
-
Val
GAC
[ENA]
¡û
>W11134697
AEED01000110
Actinomycetota
Corynebacterium accolens ATCC 49726 [AEED]
13479
13405
-
Val
GAC
[ENA]
¡û
>W1511518897
JXYP01000018
Actinomycetota
Williamsia herbipolensis ARP1 [JXYP]
144482
144408
-
Val
GAC
[ENA]
¡û
>C161074823
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
58638
58712
+
Val
GAC
-
¡û
>C161074826
CP014635
Actinomycetota
Corynebacterium simulans Wattiau [CP014635]
58959
59033
+
Val
GAC
-
¡û
>W1610068141
BCRC01000004
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
177359
177431
+
Val
GAC
[ENA]
¡û
>W1610081572
BDDR01000054
Actinomycetota
Streptomyces sp. F-3 [BDDR]
29930
29858
-
Val
GAC
[ENA]
¡û
>W121020673
AGVE01000046
Actinomycetota
Mycolicibacterium thermoresistibile ATCC 19527 [AGVE]
1257258
1257332
+
Val
GAC
[ENA]
¡û
>W1610910042
LSFR01000003
Actinomycetota
Tsukamurella tyrosinosolvens [LSFR]
432752
432678
-
Val
GAC
[ENA]
¡û
>W1610919503
LSRE01000034
Actinomycetota
Tsukamurella pseudospumae [LSRE]
218383
218457
+
Val
GAC
[ENA]
¡û
>W1610919701
LSRI01000022
Actinomycetota
Tsukamurella pulmonis [LSRI]
375877
375803
-
Val
GAC
[ENA]
¡û
>W1710065514
BCRC01000004
Actinomycetota
Corynebacterium minutissimum NBRC 15361 [BCRC]
177359
177431
+
Val
GAC
[ENA]
¡û
>W1710066043
BCRN01000002
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
313080
313154
+
Val
GAC
[ENA]
¡û
>W1710080287
BDDR01000054
Actinomycetota
Streptomyces sp. F-3 [BDDR]
29930
29858
-
Val
GAC
[ENA]
¡û
>W1710527711
FNLF01000002
Actinomycetota
Tsukamurella pulmonis [FNLF]
2183798
2183872
+
Val
GAC
[ENA]
¡û
>W1710589947
FRAP01000004
Actinomycetota
Pseudonocardia thermophila [FRAP]
141835
141909
+
Val
GAC
[ENA]
¡û
>W1710598115
FTNT01000003
Actinomycetota
Williamsia sterculiae [FTNT]
148589
148515
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK