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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452732 (45 seq.)
>W1711019180
LQXN01000005
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
679
754
+
Lys
TTT
[ENA]
¡û
>W1711019187
LQXN01000038
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
589
514
-
Lys
TTT
[ENA]
¡û
>W1711019224
LQXN01000058
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
132920
132848
-
Lys
TTT
[ENA]
¡û
>W1711019238
LQXN01000063
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
314539
314464
-
Lys
TTT
[ENA]
¡û
>W1711101897
LTNF01000114
Bacillota
Bacillus sp. HMSC76G11 [LTNF]
14601
14526
-
Lys
TTT
[ENA]
¡û
>W1711182098
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
562753
562828
+
Lys
TTT
[ENA]
¡û
>W1711182105
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
1375126
1375201
+
Lys
TTT
[ENA]
¡û
>W1711182153
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
369463
369391
-
Lys
TTT
[ENA]
¡û
>C171114038
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
167134
167206
+
Lys
TTT
-
¡û
>C171114071
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
4252615
4252540
-
Lys
TTT
-
¡û
>C171114078
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
3454195
3454120
-
Lys
TTT
-
¡û
>WENV180101198
OAOU01005751
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
478
553
+
Lys
TTT
[ENA]
¢þ
>C181033561
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
4694842
4694917
+
Lys
TTT
-
¡û
>C181033574
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
4769993
4770065
+
Lys
TTT
-
¡û
>C181033591
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
4572224
4572149
-
Lys
TTT
-
¡û
>C181033598
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
3550726
3550651
-
Lys
TTT
-
¡û
>W141520503
JGVU02000010
Bacillota
Metabacillus indicus LMG 22858 [JGVU]
23255
23330
+
Lys
TTT
[ENA]
¡û
>W141520543
JGVU02000020
Bacillota
Metabacillus indicus LMG 22858 [JGVU]
251
176
-
Lys
TTT
[ENA]
¡û
>W141753932
JNVC02000020
Bacillota
Metabacillus indicus cibi [JNVC]
346
421
+
Lys
TTT
[ENA]
¡û
>W141753939
JNVC02000021
Bacillota
Metabacillus indicus cibi [JNVC]
606
531
-
Lys
TTT
[ENA]
¡û
>W1810192093
PKLB01000002
Bacillota
Bacillus sp. UMB0893 [PKLB]
657
732
+
Lys
TTT
[ENA]
¡û
>W1810192095
PKLB01000002
Bacillota
Bacillus sp. UMB0893 [PKLB]
1064
1139
+
Lys
TTT
[ENA]
¡û
>W1810192142
PKLB01000011
Bacillota
Bacillus sp. UMB0893 [PKLB]
530
455
-
Lys
TTT
[ENA]
¡û
>W10102196
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
967
1039
+
Lys
TTT
[ENA]
¡û
>W10102220
ACPC01000022
Bacillota
Bacillus sp. m3-13 [ACPC]
194922
194847
-
Lys
TTT
[ENA]
¡û
>W11102352
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
967
1039
+
Lys
TTT
[ENA]
¡û
>W11102376
ACPC01000022
Bacillota
Bacillus sp. m3-13 [ACPC]
194922
194847
-
Lys
TTT
[ENA]
¡û
>W1511679501
LFEL01000001
Bacillota
Bacillus sp. LL01 [LFEL]
1250439
1250364
-
Lys
TTT
[ENA]
¡û
>W1511679510
LFEL01000004
Bacillota
Bacillus sp. LL01 [LFEL]
720
795
+
Lys
TTT
[ENA]
¡û
>W1511679554
LFEL01000008
Bacillota
Bacillus sp. LL01 [LFEL]
128585
128513
-
Lys
TTT
[ENA]
¡û
>W1610072347
BCUW01000080
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
345
417
+
Lys
TTT
[ENA]
¡û
>W1610584094
LBMD01000012
Bacillota
Bacillus sp. CHD6a [LBMD]
36138
36213
+
Lys
TTT
[ENA]
¡û
>W1610584104
LBMD01000017
Bacillota
Bacillus sp. CHD6a [LBMD]
951
1023
+
Lys
TTT
[ENA]
¡û
>W1610584130
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
2036
1961
-
Lys
TTT
[ENA]
¡û
>W1610867332
LQXN01000005
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
679
754
+
Lys
TTT
[ENA]
¡û
>W1610867339
LQXN01000038
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
589
514
-
Lys
TTT
[ENA]
¡û
>W1610867376
LQXN01000058
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
132920
132848
-
Lys
TTT
[ENA]
¡û
>W1610867390
LQXN01000063
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
314539
314464
-
Lys
TTT
[ENA]
¡û
>W1610989315
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
562753
562828
+
Lys
TTT
[ENA]
¡û
>W1610989322
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
1375126
1375201
+
Lys
TTT
[ENA]
¡û
>W1610989370
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
369463
369391
-
Lys
TTT
[ENA]
¡û
>W1710069549
BCUW01000080
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
345
417
+
Lys
TTT
[ENA]
¡û
>W1710703242
LBMD01000012
Bacillota
Bacillus sp. CHD6a [LBMD]
36138
36213
+
Lys
TTT
[ENA]
¡û
>W1710703252
LBMD01000017
Bacillota
Bacillus sp. CHD6a [LBMD]
951
1023
+
Lys
TTT
[ENA]
¡û
>W1710703278
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
2036
1961
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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