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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452734 (82 seq.)
>W1711019170
LQXN01000001
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
5937
5864
-
Phe
GAA
[ENA]
¡û
>W1711019204
LQXN01000049
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
43134
43059
-
Phe
GAA
[ENA]
¡û
>W1711182101
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
563169
563241
+
Phe
GAA
[ENA]
¡û
>W1711182117
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
1376272
1376347
+
Phe
GAA
[ENA]
¡û
>W1711182132
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
3808239
3808164
-
Phe
GAA
[ENA]
¡û
>W1711190887
LWSG01000002
Bacillota
Metabacillus litoralis [LWSG]
2107
2182
+
Phe
GAA
[ENA]
¡û
>W1711190903
LWSG01000008
Bacillota
Metabacillus litoralis [LWSG]
1589
1664
+
Phe
GAA
[ENA]
¡û
>W1711190945
LWSG01000024
Bacillota
Metabacillus litoralis [LWSG]
34610
34535
-
Phe
GAA
[ENA]
¡û
>W1711190960
LWSG01000034
Bacillota
Metabacillus litoralis [LWSG]
343609
343534
-
Phe
GAA
[ENA]
¡û
>W1711190985
LWSG01000043
Bacillota
Metabacillus litoralis [LWSG]
241438
241365
-
Phe
GAA
[ENA]
¡û
>W1711720207
MTIR01000001
Bacillota
Metabacillus halosaccharovorans [MTIR]
1470023
1470098
+
Phe
GAA
[ENA]
¡û
>W1711720228
MTIR01000001
Bacillota
Metabacillus halosaccharovorans [MTIR]
1430245
1430172
-
Phe
GAA
[ENA]
¡û
>W1711720263
MTIR01000004
Bacillota
Metabacillus halosaccharovorans [MTIR]
2027160
2027085
-
Phe
GAA
[ENA]
¡û
>W1711720285
MTIR01000004
Bacillota
Metabacillus halosaccharovorans [MTIR]
1349178
1349103
-
Phe
GAA
[ENA]
¡û
>W1711720425
MTIT01000002
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
121960
122036
+
Phe
GAA
[ENA]
¡û
>W1711720441
MTIT01000002
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1038626
1038701
+
Phe
GAA
[ENA]
¡û
>W1711720487
MTIT01000004
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
350976
350901
-
Phe
GAA
[ENA]
¡û
>C171045165
CP016020
Bacillota
Bacillus weihaiensis Alg07 [CP016020]
843916
843991
+
Phe
GAA
-
¡û
>C171045176
CP016020
Bacillota
Bacillus weihaiensis Alg07 [CP016020]
4222238
4222311
+
Phe
GAA
-
¡û
>C171045222
CP016020
Bacillota
Bacillus weihaiensis Alg07 [CP016020]
3496427
3496352
-
Phe
GAA
-
¡û
>C171114058
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
1010444
1010519
+
Phe
GAA
-
¡û
>C171114074
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
4252347
4252271
-
Phe
GAA
-
¡û
>C171114090
CP020880
Bacillota
Sutcliffiella horikoshii 20a [CP020880]
3452959
3452886
-
Phe
GAA
-
¡û
>W131065527
ANNK01000001
Bacillota
Halalkalibacterium ligniniphilum L1(2012) [ANNK]
42059
42134
+
Phe
GAA
[ENA]
¡û
>W131065565
ANNK01000137
Bacillota
Halalkalibacterium ligniniphilum L1(2012) [ANNK]
431
356
-
Phe
GAA
[ENA]
¡û
>W141277177
JAEK01000031
Bacillota
Bacillus sp. J37 [JAEK]
25114
25041
-
Phe
GAA
[ENA]
¡û
>W141277217
JAEK01000086
Bacillota
Bacillus sp. J37 [JAEK]
2321
2246
-
Phe
GAA
[ENA]
¡û
>W141277234
JAEK01000090
Bacillota
Bacillus sp. J37 [JAEK]
1273
1348
+
Phe
GAA
[ENA]
¡û
>C191098563
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
395884
395958
+
Phe
GAA
-
¡û
>C191098631
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
4690193
4690268
+
Phe
GAA
-
¡û
>C191098647
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
4739294
4739368
+
Phe
GAA
-
¡û
>C191098662
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
4136348
4136275
-
Phe
GAA
-
¡û
>C191098678
CP033043
Bacillota
Metabacillus litoralis Bac94 [CP033043]
2962539
2962464
-
Phe
GAA
-
¡û
>W1910930270
NISO01000003
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
40436
40508
+
Phe
GAA
[ENA]
¡û
>W1910930286
NISO01000003
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
793499
793574
+
Phe
GAA
[ENA]
¡û
>W1910930303
NISO01000004
Bacillota
Bacillus alkalisoli FJAT-45122 [NISO]
1983910
1983835
-
Phe
GAA
[ENA]
¡û
>W1910930407
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
1013
1088
+
Phe
GAA
[ENA]
¡û
>W1910930423
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
3118806
3118878
+
Phe
GAA
[ENA]
¡û
>W1910930468
NISQ01000001
Bacillota
Bacillus sp. FJAT-45066 [NISQ]
2367026
2366951
-
Phe
GAA
[ENA]
¡û
>W1911145523
NPCL01000098
Bacillota
Bacillus sp. 7586-K [NPCL]
288
361
+
Phe
GAA
[ENA]
¡û
>W1911145526
NPCL01000112
Bacillota
Bacillus sp. 7586-K [NPCL]
349
275
-
Phe
GAA
[ENA]
¡û
>W1911145543
NPCL01000234
Bacillota
Bacillus sp. 7586-K [NPCL]
172
98
-
Phe
GAA
[ENA]
¡û
>W1911331160
NUMC01000007
Bacillota
Bacillus sp. AFS040349 [NUMC]
1644
1719
+
Phe
GAA
[ENA]
¡û
>W1911331215
NUMC01000155
Bacillota
Bacillus sp. AFS040349 [NUMC]
1245
1319
+
Phe
GAA
[ENA]
¡û
>W1911331219
NUMC01000156
Bacillota
Bacillus sp. AFS040349 [NUMC]
15155
15082
-
Phe
GAA
[ENA]
¡û
>W1911331227
NUMC01000189
Bacillota
Bacillus sp. AFS040349 [NUMC]
728
802
+
Phe
GAA
[ENA]
¡û
>W1911594983
PNGA01000001
Bacillota
Bacillus sp. UMB0899 [PNGA]
722126
722200
+
Phe
GAA
[ENA]
¡û
>W1911595007
PNGA01000006
Bacillota
Bacillus sp. UMB0899 [PNGA]
2371
2446
+
Phe
GAA
[ENA]
¡û
>W1911595019
PNGA01000011
Bacillota
Bacillus sp. UMB0899 [PNGA]
134003
133930
-
Phe
GAA
[ENA]
¡û
>W1911595049
PNGA01000029
Bacillota
Bacillus sp. UMB0899 [PNGA]
39243
39169
-
Phe
GAA
[ENA]
¡û
>W1911670415
QFRU01000020
Bacillota
Bacillus sp. CGMCC 1.16541 [QFRU]
89694
89619
-
Phe
GAA
[ENA]
¡û
>W1911670465
QFRU01000063
Bacillota
Bacillus sp. CGMCC 1.16541 [QFRU]
237
162
-
Phe
GAA
[ENA]
¡û
>ENV09003608
ADGO01103081
Compost metagenome contig00001
490
417
-
Phe
GAA
[ENA]
¡û
>W10102210
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
126056
126129
+
Phe
GAA
[ENA]
¡û
>W10102223
ACPC01000022
Bacillota
Bacillus sp. m3-13 [ACPC]
194657
194581
-
Phe
GAA
[ENA]
¡û
>W10102233
ACPC01000044
Bacillota
Bacillus sp. m3-13 [ACPC]
878
953
+
Phe
GAA
[ENA]
¡û
>W11102366
ACPC01000019
Bacillota
Bacillus sp. m3-13 [ACPC]
126056
126129
+
Phe
GAA
[ENA]
¡û
>W11102379
ACPC01000022
Bacillota
Bacillus sp. m3-13 [ACPC]
194657
194581
-
Phe
GAA
[ENA]
¡û
>W11102389
ACPC01000044
Bacillota
Bacillus sp. m3-13 [ACPC]
878
953
+
Phe
GAA
[ENA]
¡û
>W1511583609
LATZ01000047
Bacillota
Bacillus sp. SA1-12 [LATZ]
10639
10564
-
Phe
GAA
[ENA]
¡û
>W1511583645
LATZ01000131
Bacillota
Bacillus sp. SA1-12 [LATZ]
249483
249408
-
Phe
GAA
[ENA]
¡û
>W1511679504
LFEL01000001
Bacillota
Bacillus sp. LL01 [LFEL]
1250014
1249942
-
Phe
GAA
[ENA]
¡û
>W1511679522
LFEL01000004
Bacillota
Bacillus sp. LL01 [LFEL]
2147
2220
+
Phe
GAA
[ENA]
¡û
>W1511679536
LFEL01000004
Bacillota
Bacillus sp. LL01 [LFEL]
496711
496636
-
Phe
GAA
[ENA]
¡û
>W1610072759
BCVG01000012
Bacillota
Metabacillus fastidiosus NBRC 101226 [BCVG]
34953
34880
-
Phe
GAA
[ENA]
¡û
>W1610584097
LBMD01000012
Bacillota
Bacillus sp. CHD6a [LBMD]
36558
36630
+
Phe
GAA
[ENA]
¡û
>W1610584142
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
702
629
-
Phe
GAA
[ENA]
¡û
>W1610584157
LBMD01000049
Bacillota
Bacillus sp. CHD6a [LBMD]
4272
4197
-
Phe
GAA
[ENA]
¡û
>W1610867322
LQXN01000001
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
5937
5864
-
Phe
GAA
[ENA]
¡û
>W1610867356
LQXN01000049
Bacillota
Sutcliffiella horikoshii DSM 8719 [LQXN]
43134
43059
-
Phe
GAA
[ENA]
¡û
>W1610989318
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
563169
563241
+
Phe
GAA
[ENA]
¡û
>W1610989334
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
1376272
1376347
+
Phe
GAA
[ENA]
¡û
>W1610989349
LWJI01000002
Bacillota
Sutcliffiella horikoshii [LWJI]
3808239
3808164
-
Phe
GAA
[ENA]
¡û
>W1610992490
LWSG01000002
Bacillota
Metabacillus litoralis [LWSG]
2107
2182
+
Phe
GAA
[ENA]
¡û
>W1610992506
LWSG01000008
Bacillota
Metabacillus litoralis [LWSG]
1589
1664
+
Phe
GAA
[ENA]
¡û
>W1610992548
LWSG01000024
Bacillota
Metabacillus litoralis [LWSG]
34610
34535
-
Phe
GAA
[ENA]
¡û
>W1610992563
LWSG01000034
Bacillota
Metabacillus litoralis [LWSG]
343609
343534
-
Phe
GAA
[ENA]
¡û
>W1610992588
LWSG01000043
Bacillota
Metabacillus litoralis [LWSG]
241438
241365
-
Phe
GAA
[ENA]
¡û
>W1710069877
BCVG01000012
Bacillota
Metabacillus fastidiosus NBRC 101226 [BCVG]
34953
34880
-
Phe
GAA
[ENA]
¡û
>W1710703245
LBMD01000012
Bacillota
Bacillus sp. CHD6a [LBMD]
36558
36630
+
Phe
GAA
[ENA]
¡û
>W1710703290
LBMD01000033
Bacillota
Bacillus sp. CHD6a [LBMD]
702
629
-
Phe
GAA
[ENA]
¡û
>W1710703305
LBMD01000049
Bacillota
Bacillus sp. CHD6a [LBMD]
4272
4197
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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