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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45277 (36 seq.)
>W1711394900
MESN01000635
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_60_6 [MESN]
721
634
-
Ser
TGA
[ENA]
¡û
>W1711394998
MESQ01000024
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
38465
38378
-
Ser
TGA
[ENA]
¡û
>C171091706
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
940183
940096
-
Ser
TGA
-
¡û
>W131229577
AUGX01000008
Betaproteobacteria
Ottowia thiooxydans DSM 14619 [AUGX]
232904
232991
+
Ser
TGA
[ENA]
¡û
>WENV180017821
FSXQ01003659
[FSXQ] metagenome; soil
11
98
+
Ser
TGA
[ENA]
¢þ
>WENV180020882
FTDG01000755
[FTDG] metagenome; soil
2825
2738
-
Ser
TGA
[ENA]
¢þ
>WENV180024160
FTIF01103805
[FTIF] metagenome; soil
12
99
+
Ser
TGA
[ENA]
¢þ
>WENV180025391
FTIP01001053
[FTIP] metagenome; soil
59
146
+
Ser
TGA
[ENA]
¢þ
>WENV180025533
FTIP01043343
[FTIP] metagenome; soil
84
171
+
Ser
TGA
[ENA]
¢þ
>WENV180030610
FTJN01000931
[FTJN] metagenome; soil
66698
66611
-
Ser
TGA
[ENA]
¢þ
>WENV181170755
OEIV010083653
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
505
418
-
Ser
TGA
[ENA]
¢þ
>WENV181363118
OFOS01000030
[OFOS] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181364508
OFOW01000303
[OFOW] sediment metagenome; Lake sediment
2058
1971
-
Ser
TGA
[ENA]
¢þ
>WENV181364551
OFOY01000028
[OFOY] sediment metagenome; Lake sediment
2073
1986
-
Ser
TGA
[ENA]
¢þ
>WENV181364596
OFOZ01000093
[OFOZ] sediment metagenome; Lake sediment
8935
9022
+
Ser
TGA
[ENA]
¢þ
>WENV181364654
OFPA01000035
[OFPA] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181364723
OFPB01000049
[OFPB] sediment metagenome; Lake sediment
23392
23479
+
Ser
TGA
[ENA]
¢þ
>WENV181364824
OFPE01000219
[OFPE] sediment metagenome; Lake sediment
692
779
+
Ser
TGA
[ENA]
¢þ
>WENV181364935
OFPG01000152
[OFPG] sediment metagenome; Lake sediment
7570
7483
-
Ser
TGA
[ENA]
¢þ
>WENV181365001
OFPH01000148
[OFPH] sediment metagenome; Lake sediment
4272
4359
+
Ser
TGA
[ENA]
¢þ
>WENV181365049
OFPI01000043
[OFPI] sediment metagenome; Lake sediment
23410
23497
+
Ser
TGA
[ENA]
¢þ
>WENV181365078
OFPJ01000014
[OFPJ] sediment metagenome; Lake sediment
35443
35530
+
Ser
TGA
[ENA]
¢þ
>WENV181365146
OFPK01000033
[OFPK] sediment metagenome; Lake sediment
40720
40807
+
Ser
TGA
[ENA]
¢þ
>WENV181365199
OFPL01000069
[OFPL] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181365255
OFPM01002567
[OFPM] sediment metagenome; Lake sediment
527
440
-
Ser
TGA
[ENA]
¢þ
>WENV181365290
OFPN01000037
[OFPN] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181365332
OFPO01000098
[OFPO] sediment metagenome; Lake sediment
11843
11930
+
Ser
TGA
[ENA]
¢þ
>WENV181365395
OFPQ01000174
[OFPQ] sediment metagenome; Lake sediment
2008
1921
-
Ser
TGA
[ENA]
¢þ
>WENV181370406
OFQS01008840
[OFQS] freshwater metagenome; Freshwater Lake
819
906
+
Ser
TGA
[ENA]
¢þ
>W141142428
AWQR01000002
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
75646
75733
+
Ser
TGA
[ENA]
¡û
>WENV170557537
CXWL01029683
[CXWL] groundwater metagenome; biofilm material
4079
3992
-
Ser
TGA
[ENA]
¢þ
>WENV170609362
FUWD011382601
[FUWD] metagenome; unknown
116
203
+
Ser
TGA
[ENA]
¢þ
>WENV170639356
JFJP01002036
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
9163
9250
+
Ser
TGA
[ENA]
¢þ
>W1910744108
MHZY01000171
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
4397
4310
-
Ser
TGA
[ENA]
¡û
>W1810570333
QEII01000324
Betaproteobacteria
Rhodoferax ferrireducens OTU1 [QEII]
21911
21824
-
Ser
TGA
[ENA]
¡û
>W1710579559
FPIQ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
377984
378071
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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