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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45286 (78 seq.)
>W1710787540
LJJR01000031
Deinococcota
Thermus scotoductus [LJJR]
7496
7583
+
Leu
TAA
[ENA]
¡û
>W131155606
AQOS01000013
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
29999
29912
-
Leu
TAA
[ENA]
¡û
>W131160741
AQWU01000071
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
81662
81749
+
Leu
TAA
[ENA]
¡û
>W131177925
ARLD01000089
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
57815
57902
+
Leu
TAA
[ENA]
¡û
>W131218084
ATXJ01000002
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
202659
202746
+
Leu
TAA
[ENA]
¡û
>W131231941
AUIW01000002
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
129022
129109
+
Leu
TAA
[ENA]
¡û
>C171047235
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
317315
317228
-
Leu
TAA
-
¡û
>C025875
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
359615
359702
+
Leu
TAA
[Ensembl]
¡û
>C025929
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
688939
689026
+
Leu
TAA
[Ensembl]
¡û
>WENV180015027
FQKF010280637
[FQKF] soil metagenome; Soil
2
89
+
Leu
TAA
[ENA]
¢þ
>WENV180036589
FVAA010194451
[FVAA] soil metagenome; Soil
88
1
-
Leu
TAA
[ENA]
¢þ
>W141080502
ATNI01000031
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
15406
15493
+
Leu
TAA
[ENA]
¡û
>WENV181227374
OFDN01008519
[OFDN] hot springs metagenome; Water
318
405
+
Leu
TAA
[ENA]
¢þ
>WENV181404628
OGCB01000005
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
48213
48300
+
Leu
TAA
[ENA]
¢þ
>WENV181405355
OGCE01000014
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
47120
47033
-
Leu
TAA
[ENA]
¢þ
>WENV181408116
OGCH01000609
[OGCH] hot springs metagenome; hot springs
17060
17147
+
Leu
TAA
[ENA]
¢þ
>WENV170700810
LJSS01001632
[LJSS] hot springs metagenome; water from Lobios Hot Spring
1960
1873
-
Leu
TAA
[ENA]
¢þ
>C181003595
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
545964
545877
-
Leu
TAA
-
¡û
>C191159650
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
183188
183275
+
Leu
TAA
-
¡û
>C191190031
LR027517
Deinococcota
Thermus thermophilus [LR027517]
929699
929612
-
Leu
TAA
-
¡û
>W141818231
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
226558
226645
+
Leu
TAA
[ENA]
¡û
>W141818295
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
1950299
1950212
-
Leu
TAA
[ENA]
¡û
>W141820348
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
760159
760246
+
Leu
TAA
[ENA]
¡û
>W141820737
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
392196
392283
+
Leu
TAA
[ENA]
¡û
>W1911578803
PELL01000329
Deinococcota
Thermus scotoductus 39_S39 [PELL]
41182
41095
-
Leu
TAA
[ENA]
¡û
>W1911578829
PELM01000022
Deinococcota
Thermus scotoductus 38_S38 [PELM]
5100
5013
-
Leu
TAA
[ENA]
¡û
>W1911578875
PELN01000029
Deinococcota
Thermus scotoductus 37_S37 [PELN]
1615
1702
+
Leu
TAA
[ENA]
¡û
>W1911578957
PELO01000295
Deinococcota
Thermus scotoductus 35_S35 [PELO]
4644
4557
-
Leu
TAA
[ENA]
¡û
>W1911578969
PELP01000036
Deinococcota
Thermus scotoductus 34_S34 [PELP]
1580
1667
+
Leu
TAA
[ENA]
¡û
>W1911579062
PELQ01000347
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
4639
4552
-
Leu
TAA
[ENA]
¡û
>W1911579072
PELR01000026
Deinococcota
Thermus scotoductus 32_S32 [PELR]
1615
1702
+
Leu
TAA
[ENA]
¡û
>W1911579132
PELS01000222
Deinococcota
Thermus scotoductus 31_S31 [PELS]
32321
32408
+
Leu
TAA
[ENA]
¡û
>W1911579202
PELT01000297
Deinococcota
Thermus scotoductus 30_S30 [PELT]
6629
6716
+
Leu
TAA
[ENA]
¡û
>W1911579222
PELU01000129
Deinococcota
Thermus scotoductus 29_S29 [PELU]
1560
1473
-
Leu
TAA
[ENA]
¡û
>W1911579297
PELV01000399
Deinococcota
Thermus scotoductus 28_S28 [PELV]
6427
6514
+
Leu
TAA
[ENA]
¡û
>W1911579337
PELW01000331
Deinococcota
Thermus scotoductus 27_S27 [PELW]
10063
10150
+
Leu
TAA
[ENA]
¡û
>W1911579390
PELX01000314
Deinococcota
Thermus scotoductus 26_S26 [PELX]
29886
29973
+
Leu
TAA
[ENA]
¡û
>W1911579433
PELY01000222
Deinococcota
Thermus scotoductus 25_S25 [PELY]
2723
2810
+
Leu
TAA
[ENA]
¡û
>W1911579473
PELZ01000222
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
5303
5390
+
Leu
TAA
[ENA]
¡û
>W1911579524
PEMA01000302
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
4644
4557
-
Leu
TAA
[ENA]
¡û
>W1911579541
PEMB01000014
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
2506
2593
+
Leu
TAA
[ENA]
¡û
>W1911579626
PEMC01000313
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
4612
4525
-
Leu
TAA
[ENA]
¡û
>W1911579675
PEMD01000286
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
30682
30769
+
Leu
TAA
[ENA]
¡û
>W1911579727
PEME01000335
Deinococcota
Thermus scotoductus 19_S19 [PEME]
4639
4552
-
Leu
TAA
[ENA]
¡û
>W1911579758
PEMF01000222
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
2513
2600
+
Leu
TAA
[ENA]
¡û
>W1911579812
PEMG01000429
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
30389
30476
+
Leu
TAA
[ENA]
¡û
>W1911579828
PEMH01000012
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
4625
4538
-
Leu
TAA
[ENA]
¡û
>W1911579878
PEMI01000028
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
1729
1816
+
Leu
TAA
[ENA]
¡û
>W1911579966
PEMJ01000357
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
1788
1875
+
Leu
TAA
[ENA]
¡û
>W1911579996
PEMK01000278
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
4793
4706
-
Leu
TAA
[ENA]
¡û
>W1911580031
PEML01000111
Deinococcota
Thermus scotoductus 12_S12 [PEML]
35515
35602
+
Leu
TAA
[ENA]
¡û
>W1911580067
PEMM01000016
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
4646
4559
-
Leu
TAA
[ENA]
¡û
>W1911580133
PEMN01000111
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
2513
2600
+
Leu
TAA
[ENA]
¡û
>W1911580166
PEMO01000026
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
1615
1702
+
Leu
TAA
[ENA]
¡û
>W1911580255
PEMP01000427
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
7123
7036
-
Leu
TAA
[ENA]
¡û
>W1911580271
PEMQ01000111
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
35515
35602
+
Leu
TAA
[ENA]
¡û
>W1911580336
PEMR01000222
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
32321
32408
+
Leu
TAA
[ENA]
¡û
>W1911580366
PEMS01000111
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
9763
9850
+
Leu
TAA
[ENA]
¡û
>W1911580423
PEMT01000111
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
32321
32408
+
Leu
TAA
[ENA]
¡û
>W1911580491
PEMU01000304
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
32321
32408
+
Leu
TAA
[ENA]
¡û
>W1911580532
PEMV01000306
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
7607
7694
+
Leu
TAA
[ENA]
¡û
>W1911580558
PEMW01000111
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
2924
3011
+
Leu
TAA
[ENA]
¡û
>W1810268425
PRDA01000005
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
26948
26861
-
Leu
TAA
[ENA]
¡û
>W1810605072
QGMX01000001
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
235086
234999
-
Leu
TAA
[ENA]
¡û
>W1810889181
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
550210
550123
-
Leu
TAA
[ENA]
¡û
>W1511401705
JTJB01000034
Deinococcota
Thermus sp. 2.9 [JTJB]
93937
94024
+
Leu
TAA
[ENA]
¡û
>C11123046
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
809768
809855
+
Leu
TAA
[Ensembl]
¡û
>C11123182
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
698579
698666
+
Leu
TAA
[Ensembl]
¡û
>C121006426
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
1494384
1494297
-
Leu
TAA
[Ensembl]
¡û
>C121009751
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
1225224
1225137
-
Leu
TAA
[Ensembl]
¡û
>C161067108
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
1292015
1291928
-
Leu
TAA
[Ensembl]
¡û
>W121056036
AIJQ01000005
Deinococcota
Thermus parvatiensis RL [AIJQ]
60270
60357
+
Leu
TAA
[ENA]
¡û
>W1610045326
BBBL01000162
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1792
1879
+
Leu
TAA
[ENA]
¡û
>W1610045410
BBBN01000143
Deinococcota
Thermus sp. JCM 17653 [BBBN]
257
344
+
Leu
TAA
[ENA]
¡û
>W1610651395
LJJR01000031
Deinococcota
Thermus scotoductus [LJJR]
7496
7583
+
Leu
TAA
[ENA]
¡û
>W1710042167
BBBL01000162
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1792
1879
+
Leu
TAA
[ENA]
¡û
>W1710042251
BBBN01000143
Deinococcota
Thermus sp. JCM 17653 [BBBN]
257
344
+
Leu
TAA
[ENA]
¡û
>W1710514637
FNBC01000004
Deinococcota
Thermus arciformis [FNBC]
77706
77793
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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