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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453762 (62 seq.)
>W1710991266
LPXO01000001
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
182675
182601
-
Val
CAC
[ENA]
¡û
>W1711126397
LUOO01000003
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
94561
94635
+
Val
CAC
[ENA]
¡û
>W1711175851
LWFA01001664
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
21404
21478
+
Val
CAC
[ENA]
¡û
>W1711229302
LXYH01000056
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
19556
19482
-
Val
CAC
[ENA]
¡û
>W1711572449
MNBW01000012
Alphaproteobacteria
Nioella nitratireducens [MNBW]
93033
93107
+
Val
CAC
[ENA]
¡û
>W1711709283
MSYR01000001
Alphaproteobacteria
Rhodovulum sulfidophilum [MSYR]
2721902
2721828
-
Val
CAC
[ENA]
¡û
>W1711712882
MTCO01000334
Alphaproteobacteria
Brevirhabdus pacifica [MTCO]
287
361
+
Val
CAC
[ENA]
¡û
>w011967
AALY01000002
Alphaproteobacteria
Roseovarius nubinhibens ISM [AALY]
848035
847964
-
Val
CAC
[ENA]
¡û
>WENV180014087
FPIC01049648
[FPIC] soil metagenome; Soil
3193
3119
-
Val
CAC
[ENA]
¢þ
>WENV180361034
OBNU01092461
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
292
218
-
Val
CAC
[ENA]
¢þ
>WENV181162875
OEIO01028735
[OEIO] marine metagenome; sea ice
220
294
+
Val
CAC
[ENA]
¢þ
>W141278725
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
3489671
3489597
-
Val
CAC
[ENA]
¡û
>WENV183719446
PDWJ01014300
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
17
91
+
Val
CAC
[ENA]
¢þ
>WENV170016004
AZIJ01007460
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
2815
2741
-
Val
CAC
[ENA]
¢þ
>WENV170269009
CERH01022441
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1669
1595
-
Val
CAC
[ENA]
¢þ
>WENV170550845
CXWF01036839
[CXWF] marine metagenome genome assembly TARA_064_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
40722
40796
+
Val
CAC
[ENA]
¢þ
>WENV170634419
FYBJ01001209
[FYBJ] marine metagenome; marine
1750
1824
+
Val
CAC
[ENA]
¢þ
>WENV170634470
FYBJ01001417
[FYBJ] marine metagenome; marine
30429
30355
-
Val
CAC
[ENA]
¢þ
>WENV170682435
LFIK01000118
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
3939
4013
+
Val
CAC
[ENA]
¢þ
>WENV170729178
LULF01012660
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
1175
1249
+
Val
CAC
[ENA]
¢þ
>WENV170739272
LULQ01000080
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
1378
1304
-
Val
CAC
[ENA]
¢þ
>WENV170744183
LULW01034238
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
239
313
+
Val
CAC
[ENA]
¢þ
>WENV170803780
MDSW01035568
[MDSW] marine metagenome; seawater
3590
3516
-
Val
CAC
[ENA]
¢þ
>WENV170901582
MDTD01172558
[MDTD] marine metagenome; seawater
33862
33936
+
Val
CAC
[ENA]
¢þ
>W09132565
ACNX01000016
Alphaproteobacteria
Ruegeria lacuscaerulensis ITI-1157 [ACNX]
58188
58262
+
Val
CAC
[ENA]
¡û
>C191020019
CP022303
Alphaproteobacteria
Thalassococcus sp. S3 [CP022303]
1898709
1898783
+
Val
CAC
-
¡û
>W1910442919
FWFQ01000001
Alphaproteobacteria
Pseudoruegeria aquimaris CECT 7680 [FWFQ]
173502
173428
-
Val
CAC
[ENA]
¡û
>W1911492678
OBEA01000005
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
139468
139394
-
Val
CAC
[ENA]
¡û
>W1911495042
OBMN01000008
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
12677
12751
+
Val
CAC
[ENA]
¡û
>W1911653476
QDFI01000045
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
4675
4601
-
Val
CAC
[ENA]
¡û
>W1810061269
PDNI01000058
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
305539
305613
+
Val
CAC
[ENA]
¡û
>W1810090266
PGFI01000012
Alphaproteobacteria
Brevirhabdus pacifica DSM 27767 [PGFI]
68608
68534
-
Val
CAC
[ENA]
¡û
>W1810364784
PVTN01000002
Alphaproteobacteria
Marivita geojedonensis DSM 29432 [PVTN]
93520
93446
-
Val
CAC
[ENA]
¡û
>W1810486749
QAYC01000003
Alphaproteobacteria
Rhodovulum kholense DSM 19783 [QAYC]
331878
331952
+
Val
CAC
[ENA]
¡û
>C151006771
CP004393
Alphaproteobacteria
Celeribacter indicus P73 [CP004393]
2938534
2938460
-
Val
CAC
[Ensembl]
¡û
>C11111803
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
1104595
1104669
+
Val
CAC
[Ensembl]
¡û
>C11111869
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1511107
1511181
+
Val
CAC
[Ensembl]
¡û
>W1511518791
JXYH01000042
Alphaproteobacteria
Aestuariivita boseongensis BS-B2 [JXYH]
13151
13225
+
Val
CAC
[ENA]
¡û
>C161087715
CP015418
Alphaproteobacteria
Rhodovulum sulfidophilum DSM 1374 [CP015418]
1357782
1357856
+
Val
CAC
-
¡û
>C161099987
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1494788
1494862
+
Val
CAC
-
¡û
>W1610018444
AQQX01000003
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
158270
158196
-
Val
CAC
[ENA]
¡û
>W1610578304
LAXI01000015
Alphaproteobacteria
Roseovarius indicus [LAXI]
14914
14840
-
Val
CAC
[ENA]
¡û
>W1610845938
LPXO01000001
Alphaproteobacteria
Pseudoponticoccus marisrubri SJ5A-1 [LPXO]
182675
182601
-
Val
CAC
[ENA]
¡û
>W1610937330
LUOO01000003
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
94561
94635
+
Val
CAC
[ENA]
¡û
>W1610984164
LWFA01001664
Alphaproteobacteria
Roseovarius sp. HI0049 [LWFA]
21404
21478
+
Val
CAC
[ENA]
¡û
>W1611013172
LXYH01000056
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
19556
19482
-
Val
CAC
[ENA]
¡û
>W1710015534
AQQT01000002
Alphaproteobacteria
Loktanella sp. 22II-4b [AQQT]
68532
68458
-
Val
CAC
[ENA]
¡û
>W1710015660
AQQX01000003
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
158270
158196
-
Val
CAC
[ENA]
¡û
>W1710083048
BDIY01000006
Alphaproteobacteria
Roseovarius sp. A-2 [BDIY]
86370
86444
+
Val
CAC
[ENA]
¡û
>W1710514205
FNAT01000005
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
172199
172125
-
Val
CAC
[ENA]
¡û
>W1710518959
FNEJ01000003
Alphaproteobacteria
Salipiger marinus marina [FNEJ]
782
708
-
Val
CAC
[ENA]
¡û
>W1710524227
FNIO01000002
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
535830
535904
+
Val
CAC
[ENA]
¡û
>W1710529300
FNNW01000001
Alphaproteobacteria
Celeribacter indicus [FNNW]
481943
481869
-
Val
CAC
[ENA]
¡û
>W1710542588
FNZG01000003
Alphaproteobacteria
Pseudooceanicola nitratireducens [FNZG]
76404
76330
-
Val
CAC
[ENA]
¡û
>W1710543729
FOAG01000003
Alphaproteobacteria
Roseovarius azorensis [FOAG]
187404
187330
-
Val
CAC
[ENA]
¡û
>W1710559833
FOMY01000001
Alphaproteobacteria
Roseovarius indicus [FOMY]
129427
129501
+
Val
CAC
[ENA]
¡û
>W1710584237
FQVK01000006
Alphaproteobacteria
Ruegeria intermedia [FQVK]
107908
107982
+
Val
CAC
[ENA]
¡û
>W1710586321
FQXC01000002
Alphaproteobacteria
Marivita hallyeonensis [FQXC]
358409
358335
-
Val
CAC
[ENA]
¡û
>W1710591379
FRBR01000001
Alphaproteobacteria
Roseovarius pacificus [FRBR]
186249
186175
-
Val
CAC
[ENA]
¡û
>W1710591910
FRCB01000007
Alphaproteobacteria
Roseovarius litoreus [FRCB]
193598
193672
+
Val
CAC
[ENA]
¡û
>W1710599154
FTOM01000008
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
133891
133817
-
Val
CAC
[ENA]
¡û
>W1710697177
LAXI01000015
Alphaproteobacteria
Roseovarius indicus [LAXI]
14914
14840
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK