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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453942 (99 seq.)
>W1711129205
LUTU01000018
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
21932
22007
+
Ala
CGC
[ENA]
¡û
>W1711143204
LVHE01000008
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
22915
22990
+
Ala
CGC
[ENA]
¡û
>W1711503711
MKTV01000085
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
50825
50900
+
Ala
CGC
[ENA]
¡û
>W1711506183
MKWE01000027
Alphaproteobacteria
Rhodospirillales bacterium 70-18 [MKWE]
51210
51135
-
Ala
CGC
[ENA]
¡û
>C171074531
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
320802
320877
+
Ala
CGC
-
¡û
>C171074583
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
325730
325805
+
Ala
CGC
-
¡û
>C171074635
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
325227
325302
+
Ala
CGC
-
¡û
>C171074687
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
323022
323097
+
Ala
CGC
-
¡û
>C171074739
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
325731
325806
+
Ala
CGC
-
¡û
>C171074791
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
320803
320878
+
Ala
CGC
-
¡û
>W131222506
AUBI01000002
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
348666
348741
+
Ala
CGC
[ENA]
¡û
>W131240797
BAON01000009
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
70104
70179
+
Ala
CGC
[ENA]
¡û
>C000500
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
2915484
2915409
-
Ala
CGC
[Ensembl]
¡û
>C009813
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
320802
320877
+
Ala
CGC
[Ensembl]
¡û
>WENV180343412
OBLK01013172
[OBLK] soil metagenome; Clay
440
365
-
Ala
CGC
[ENA]
¢þ
>W08009503
ABPH01000005
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
77473
77548
+
Ala
CGC
[ENA]
¡û
>WENV181144984
OEHO01149938
[OEHO] metagenome; unknown
150
225
+
Ala
CGC
[ENA]
¢þ
>W141224574
BAIN01000050
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
9231
9156
-
Ala
CGC
[ENA]
¡û
>W141229932
BASM01000016
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
145582
145657
+
Ala
CGC
[ENA]
¡û
>C08005240
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
1198579
1198654
+
Ala
CGC
[Ensembl]
¡û
>WENV183662438
ORJL010192640
[ORJL] groundwater metagenome; groundwater
85
10
-
Ala
CGC
[ENA]
¢þ
>WENV183668011
ORJL010702017
[ORJL] groundwater metagenome; groundwater
5527
5452
-
Ala
CGC
[ENA]
¢þ
>WENV183671406
ORJL011056587
[ORJL] groundwater metagenome; groundwater
3764
3689
-
Ala
CGC
[ENA]
¢þ
>WENV183681272
ORMF010282473
[ORMF] groundwater metagenome; groundwater
200
125
-
Ala
CGC
[ENA]
¢þ
>WENV170669499
LAHS01000342
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
53213
53138
-
Ala
CGC
[ENA]
¢þ
>W141462257
JFHO01000067
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
3095
3170
+
Ala
CGC
[ENA]
¡û
>C181071393
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
1796424
1796349
-
Ala
CGC
-
¡û
>C191002698
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
2608569
2608494
-
Ala
CGC
-
¡û
>W141731619
JNJH01000001
Alphaproteobacteria
Acidiphilium angustum ATCC 35903 [JNJH]
41474
41399
-
Ala
CGC
[ENA]
¡û
>W09105139
AAOO01000029
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
43808
43733
-
Ala
CGC
[ENA]
¡û
>C09106292
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
2130778
2130853
+
Ala
CGC
[Ensembl]
¡û
>W1910181788
BJMI01000015
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
30179
30104
-
Ala
CGC
[ENA]
¡û
>W1910182364
BJMV01000003
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
173831
173906
+
Ala
CGC
[ENA]
¡û
>W1910913969
NHRY01000214
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
12210
12135
-
Ala
CGC
[ENA]
¡û
>W1810000655
BEWM01000002
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
44484
44409
-
Ala
CGC
[ENA]
¡û
>W1810000703
BEWN01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
62017
61942
-
Ala
CGC
[ENA]
¡û
>W1810700555
QMDI01000002
Alphaproteobacteria
Elioraea thermophila YIM 72297 [QMDI]
542291
542366
+
Ala
CGC
[ENA]
¡û
>W1810763124
QQAW01000001
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
110450
110525
+
Ala
CGC
[ENA]
¡û
>C151004003
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
322553
322628
+
Ala
CGC
[Ensembl]
¡û
>C151004055
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
322491
322566
+
Ala
CGC
[Ensembl]
¡û
>C151004107
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
320750
320825
+
Ala
CGC
[Ensembl]
¡û
>W1510011566
BBMU01000174
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
62613
62688
+
Ala
CGC
[ENA]
¡û
>C11100958
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
3257178
3257103
-
Ala
CGC
[Ensembl]
¡û
>W1511271203
JOKM01000106
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
67475
67550
+
Ala
CGC
[ENA]
¡û
>W1511620437
LCTG01000002
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
628313
628238
-
Ala
CGC
[ENA]
¡û
>W11170642
AFPR01000367
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
193
118
-
Ala
CGC
[ENA]
¡û
>W11184377
BABS01000051
Alphaproteobacteria
Acetobacter tropicalis NBRC 101654 [BABS]
948
1023
+
Ala
CGC
[ENA]
¡û
>C161095996
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
849910
849985
+
Ala
CGC
-
¡û
>C161105495
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
722261
722336
+
Ala
CGC
[Ensembl]
¡û
>W121034288
AHKI01000084
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
53723
53648
-
Ala
CGC
[ENA]
¡û
>W121123432
BADZ01000014
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
53372
53447
+
Ala
CGC
[ENA]
¡û
>W1610040664
BALE01000031
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
85371
85296
-
Ala
CGC
[ENA]
¡û
>W1610040736
BAMV01000006
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
24281
24206
-
Ala
CGC
[ENA]
¡û
>W1610040793
BAMW01000026
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
106802
106877
+
Ala
CGC
[ENA]
¡û
>W1610040849
BAMX01000026
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
2052
2127
+
Ala
CGC
[ENA]
¡û
>W1610040975
BANA01000266
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
1733
1808
+
Ala
CGC
[ENA]
¡û
>W1610040993
BANB01000055
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
793
868
+
Ala
CGC
[ENA]
¡û
>W1610041176
BANG01000007
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
29765
29690
-
Ala
CGC
[ENA]
¡û
>W1610041217
BANH01000017
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
145538
145613
+
Ala
CGC
[ENA]
¡û
>C131009979
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
1027703
1027628
-
Ala
CGC
[Ensembl]
¡û
>W1610624323
LHZH01000130
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
22775
22850
+
Ala
CGC
[ENA]
¡û
>W1610624376
LHZI01001715
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2448
2523
+
Ala
CGC
[ENA]
¡û
>W1610624394
LHZJ01000073
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
22774
22849
+
Ala
CGC
[ENA]
¡û
>W1610624528
LHZM01000075
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
23325
23400
+
Ala
CGC
[ENA]
¡û
>W1610624614
LHZO01000050
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
46540
46465
-
Ala
CGC
[ENA]
¡û
>W1610624732
LHZQ01000218
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
23511
23436
-
Ala
CGC
[ENA]
¡û
>W1610624799
LHZS01000085
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
29170
29095
-
Ala
CGC
[ENA]
¡û
>W1610624861
LHZT01000121
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
23500
23425
-
Ala
CGC
[ENA]
¡û
>W1610624881
LHZU01000052
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
456
531
+
Ala
CGC
[ENA]
¡û
>W1610940278
LUTU01000018
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
21932
22007
+
Ala
CGC
[ENA]
¡û
>W1610954212
LVHE01000008
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
22915
22990
+
Ala
CGC
[ENA]
¡û
>W1710037862
BALE01000031
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
85371
85296
-
Ala
CGC
[ENA]
¡û
>W1710037934
BAMV01000006
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
24281
24206
-
Ala
CGC
[ENA]
¡û
>W1710037991
BAMW01000026
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
106802
106877
+
Ala
CGC
[ENA]
¡û
>W1710038047
BAMX01000026
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
2052
2127
+
Ala
CGC
[ENA]
¡û
>W1710038173
BANA01000266
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
1733
1808
+
Ala
CGC
[ENA]
¡û
>W1710038191
BANB01000055
Alphaproteobacteria
Acidisphaera rubrifaciens HS-AP3 [BANB]
793
868
+
Ala
CGC
[ENA]
¡û
>W1710038374
BANG01000007
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
29765
29690
-
Ala
CGC
[ENA]
¡û
>W1710038415
BANH01000017
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
145538
145613
+
Ala
CGC
[ENA]
¡û
>W1710597389
FTNE01000004
Alphaproteobacteria
Acidiphilium rubrum [FTNE]
41095
41020
-
Ala
CGC
[ENA]
¡û
>W1710624251
JOMM01000012
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
150047
149972
-
Ala
CGC
[ENA]
¡û
>W1710624329
JOMO01000005
Alphaproteobacteria
Acetobacter orientalis [JOMO]
24574
24499
-
Ala
CGC
[ENA]
¡û
>W1710624402
JOMP01000020
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
5110
5035
-
Ala
CGC
[ENA]
¡û
>W1710624432
JOMQ01000030
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
24366
24291
-
Ala
CGC
[ENA]
¡û
>W1710624465
JOOY01000020
Alphaproteobacteria
Acetobacter orientalis [JOOY]
20451
20526
+
Ala
CGC
[ENA]
¡û
>W1710624533
JOOZ01000219
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
4723
4648
-
Ala
CGC
[ENA]
¡û
>W1710624539
JOPA01000004
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
24030
23955
-
Ala
CGC
[ENA]
¡û
>W1710624817
JOPH01000072
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
61840
61915
+
Ala
CGC
[ENA]
¡û
>W1710624942
JOPK01000042
Alphaproteobacteria
Acetobacter orientalis [JOPK]
85179
85254
+
Ala
CGC
[ENA]
¡û
>W1710624965
JOPL01000078
Alphaproteobacteria
Acetobacter sp. DsW_063 [JOPL]
286
211
-
Ala
CGC
[ENA]
¡û
>W1710755441
LHZH01000130
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
22775
22850
+
Ala
CGC
[ENA]
¡û
>W1710755494
LHZI01001715
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
2448
2523
+
Ala
CGC
[ENA]
¡û
>W1710755512
LHZJ01000073
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
22774
22849
+
Ala
CGC
[ENA]
¡û
>W1710755646
LHZM01000075
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
23325
23400
+
Ala
CGC
[ENA]
¡û
>W1710755732
LHZO01000050
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
46540
46465
-
Ala
CGC
[ENA]
¡û
>W1710755850
LHZQ01000218
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
23511
23436
-
Ala
CGC
[ENA]
¡û
>W1710755917
LHZS01000085
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
29170
29095
-
Ala
CGC
[ENA]
¡û
>W1710755979
LHZT01000121
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
23500
23425
-
Ala
CGC
[ENA]
¡û
>W1710755999
LHZU01000052
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
456
531
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK