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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.453993 (86 seq.)
>W1710875341
LMOH01000028
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
41356
41431
+
Phe
GAA
[ENA]
¡û
>C171033034
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
2793707
2793782
+
Phe
GAA
-
¡û
>C171074572
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1160865
1160790
-
Phe
GAA
-
¡û
>C171074624
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1201260
1201185
-
Phe
GAA
-
¡û
>C171074676
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1167635
1167560
-
Phe
GAA
-
¡û
>C171074728
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1165922
1165847
-
Phe
GAA
-
¡û
>C171074780
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1201261
1201186
-
Phe
GAA
-
¡û
>C171074832
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1160925
1160850
-
Phe
GAA
-
¡û
>W131182196
ARQE01000004
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
343736
343811
+
Phe
GAA
[ENA]
¡û
>W131222508
AUBI01000002
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
349172
349097
-
Phe
GAA
[ENA]
¡û
>C009854
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1160919
1160844
-
Phe
GAA
[Ensembl]
¡û
>C010040
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
1100694
1100769
+
Phe
GAA
[Ensembl]
¡û
>WENV180020379
FTCZ01002313
[FTCZ] metagenome; soil
2292
2217
-
Phe
GAA
[ENA]
¢þ
>WENV180020673
FTCZ01008182
[FTCZ] metagenome; soil
75842
75767
-
Phe
GAA
[ENA]
¢þ
>WENV180028002
FTIZ01468528
[FTIZ] metagenome; soil
115
40
-
Phe
GAA
[ENA]
¢þ
>W08009526
ABPH01000015
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
46304
46232
-
Phe
GAA
[ENA]
¡û
>W141195236
AYTY01000060
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
20125
20200
+
Phe
GAA
[ENA]
¡û
>W141229577
BAND01000038
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
153245
153320
+
Phe
GAA
[ENA]
¡û
>W141230378
BASZ01000002
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
276275
276350
+
Phe
GAA
[ENA]
¡û
>C08005277
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
1440547
1440475
-
Phe
GAA
[Ensembl]
¡û
>WENV170373404
CETS01275895
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
335
260
-
Phe
GAA
[ENA]
¢þ
>WENV170576179
FRDC01000032
[FRDC] freshwater metagenome; water
1923
1848
-
Phe
GAA
[ENA]
¢þ
>C181221188
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
1100702
1100777
+
Phe
GAA
-
¡û
>C191064541
CP029562
Alphaproteobacteria
Mesorhizobium sp. Pch-S [CP029562]
1219519
1219594
+
Phe
GAA
-
¡û
>C191121051
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
167416
167491
+
Phe
GAA
-
¡û
>W1910181403
BJLY01000003
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
165265
165190
-
Phe
GAA
[ENA]
¡û
>W1910181775
BJMI01000004
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
99417
99342
-
Phe
GAA
[ENA]
¡û
>W1910181884
BJMK01000018
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
15611
15686
+
Phe
GAA
[ENA]
¡û
>W1910183181
BJNM01000017
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
55296
55221
-
Phe
GAA
[ENA]
¡û
>C09106318
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
2368989
2368914
-
Phe
GAA
[Ensembl]
¡û
>W1911798339
QYRN01000005
Alphaproteobacteria
Aureimonas flava M2BS4Y-1 [QYRN]
190951
191026
+
Phe
GAA
[ENA]
¡û
>W1810000607
BEWL01000005
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
179891
179816
-
Phe
GAA
[ENA]
¡û
>W1810000788
BEWP01000003
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
103775
103700
-
Phe
GAA
[ENA]
¡û
>W1810763129
QQAW01000001
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
422963
422888
-
Phe
GAA
[ENA]
¡û
>C151004044
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1194337
1194262
-
Phe
GAA
[Ensembl]
¡û
>C151004080
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2278847
2278922
+
Phe
GAA
[Ensembl]
¡û
>C151004132
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2254950
2255025
+
Phe
GAA
[Ensembl]
¡û
>C151006178
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
1217494
1217569
+
Phe
GAA
[Ensembl]
¡û
>C161003892
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
1546808
1546733
-
Phe
GAA
[Ensembl]
¡û
>W1610040680
BALE01000048
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
98999
98924
-
Phe
GAA
[ENA]
¡û
>W1610056499
BBWI01000007
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
50623
50698
+
Phe
GAA
[ENA]
¡û
>W1610056587
BBWJ01000048
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
36385
36310
-
Phe
GAA
[ENA]
¡û
>W1610056642
BBWL01000007
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
1431
1356
-
Phe
GAA
[ENA]
¡û
>W1610056711
BBWM01000029
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
207542
207467
-
Phe
GAA
[ENA]
¡û
>W1610057002
BBWS01000029
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
112755
112680
-
Phe
GAA
[ENA]
¡û
>W1610057065
BBWT01000024
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
222422
222497
+
Phe
GAA
[ENA]
¡û
>W1610076507
BCYU01000011
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
61566
61641
+
Phe
GAA
[ENA]
¡û
>W1610076674
BCYX01000041
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
12183
12108
-
Phe
GAA
[ENA]
¡û
>W1610076748
BCYZ01000039
Alphaproteobacteria
Sphingomonas pruni NBRC 15498 [BCYZ]
12395
12320
-
Phe
GAA
[ENA]
¡û
>W1610588138
LDPZ01000031
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
50878
50803
-
Phe
GAA
[ENA]
¡û
>W1610588173
LDQA01000022
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
46064
46139
+
Phe
GAA
[ENA]
¡û
>W1610623998
LHZB01000108
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
36982
37057
+
Phe
GAA
[ENA]
¡û
>W1610624142
LHZD01000020
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
157116
157191
+
Phe
GAA
[ENA]
¡û
>W1610624172
LHZE01000078
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
36656
36731
+
Phe
GAA
[ENA]
¡û
>W1610624262
LHZG01000159
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
31068
30993
-
Phe
GAA
[ENA]
¡û
>W1610624505
LHZL01000164
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
55308
55233
-
Phe
GAA
[ENA]
¡û
>W1610624605
LHZN01000144
Alphaproteobacteria
Gluconobacter albidus [LHZN]
101626
101551
-
Phe
GAA
[ENA]
¡û
>W1610624698
LHZP01000029
Alphaproteobacteria
Gluconobacter roseus [LHZP]
130334
130259
-
Phe
GAA
[ENA]
¡û
>W1610624749
LHZR01000090
Alphaproteobacteria
Gluconobacter albidus [LHZR]
2774
2699
-
Phe
GAA
[ENA]
¡û
>W1610625008
LHZW01000056
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
282691
282766
+
Phe
GAA
[ENA]
¡û
>W1610737687
LMOH01000028
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
41356
41431
+
Phe
GAA
[ENA]
¡û
>W1710037878
BALE01000048
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
98999
98924
-
Phe
GAA
[ENA]
¡û
>W1710053198
BBWI01000007
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
50623
50698
+
Phe
GAA
[ENA]
¡û
>W1710053286
BBWJ01000048
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
36385
36310
-
Phe
GAA
[ENA]
¡û
>W1710053341
BBWL01000007
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
1431
1356
-
Phe
GAA
[ENA]
¡û
>W1710053410
BBWM01000029
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
207542
207467
-
Phe
GAA
[ENA]
¡û
>W1710053701
BBWS01000029
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
112755
112680
-
Phe
GAA
[ENA]
¡û
>W1710053764
BBWT01000024
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
222422
222497
+
Phe
GAA
[ENA]
¡û
>W1710074196
BCYU01000011
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
61566
61641
+
Phe
GAA
[ENA]
¡û
>W1710074363
BCYX01000041
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
12183
12108
-
Phe
GAA
[ENA]
¡û
>W1710074437
BCYZ01000039
Alphaproteobacteria
Sphingomonas pruni NBRC 15498 [BCYZ]
12395
12320
-
Phe
GAA
[ENA]
¡û
>W1710535126
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
2555615
2555690
+
Phe
GAA
[ENA]
¡û
>W1710561266
FOOA01000004
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
234461
234386
-
Phe
GAA
[ENA]
¡û
>W1710624705
JOPF01000001
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
153553
153478
-
Phe
GAA
[ENA]
¡û
>W1710624952
JOPL01000026
Alphaproteobacteria
Acetobacter sp. DsW_063 [JOPL]
26372
26447
+
Phe
GAA
[ENA]
¡û
>W1710707418
LDPZ01000031
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
50878
50803
-
Phe
GAA
[ENA]
¡û
>W1710707453
LDQA01000022
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
46064
46139
+
Phe
GAA
[ENA]
¡û
>W1710755116
LHZB01000108
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
36982
37057
+
Phe
GAA
[ENA]
¡û
>W1710755260
LHZD01000020
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
157116
157191
+
Phe
GAA
[ENA]
¡û
>W1710755290
LHZE01000078
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
36656
36731
+
Phe
GAA
[ENA]
¡û
>W1710755380
LHZG01000159
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
31068
30993
-
Phe
GAA
[ENA]
¡û
>W1710755623
LHZL01000164
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
55308
55233
-
Phe
GAA
[ENA]
¡û
>W1710755723
LHZN01000144
Alphaproteobacteria
Gluconobacter albidus [LHZN]
101626
101551
-
Phe
GAA
[ENA]
¡û
>W1710755816
LHZP01000029
Alphaproteobacteria
Gluconobacter roseus [LHZP]
130334
130259
-
Phe
GAA
[ENA]
¡û
>W1710755867
LHZR01000090
Alphaproteobacteria
Gluconobacter albidus [LHZR]
2774
2699
-
Phe
GAA
[ENA]
¡û
>W1710756126
LHZW01000056
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
282691
282766
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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