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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454013 (135 seq.)
>W1710915997
LNUR01000011
Gammaproteobacteria
Aeromonas hydrophila [LNUR]
304166
304241
+
Val
TAC
[ENA]
¡û
>W1710987324
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
39441
39366
-
Val
TAC
[ENA]
¡û
>W1710987326
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
39236
39161
-
Val
TAC
[ENA]
¡û
>W1710987328
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
39021
38946
-
Val
TAC
[ENA]
¡û
>W1710987330
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
38806
38731
-
Val
TAC
[ENA]
¡û
>W1710987332
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
38591
38516
-
Val
TAC
[ENA]
¡û
>W1711050968
LRRV01000002
Gammaproteobacteria
Aeromonas hydrophila [LRRV]
338983
339058
+
Val
TAC
[ENA]
¡û
>W1711051090
LRRW01000003
Gammaproteobacteria
Aeromonas hydrophila [LRRW]
113510
113435
-
Val
TAC
[ENA]
¡û
>W1711051163
LRRX01000004
Gammaproteobacteria
Aeromonas hydrophila [LRRX]
338984
339059
+
Val
TAC
[ENA]
¡û
>W1711051277
LRRY01000006
Gammaproteobacteria
Aeromonas hydrophila [LRRY]
365
290
-
Val
TAC
[ENA]
¡û
>W1711216579
LXME01000037
Gammaproteobacteria
Aeromonas hydrophila [LXME]
216
141
-
Val
TAC
[ENA]
¡û
>W1711263210
LYZF01000005
Gammaproteobacteria
Aeromonas hydrophila [LYZF]
488
413
-
Val
TAC
[ENA]
¡û
>W1711263329
LYZG01000013
Gammaproteobacteria
Aeromonas hydrophila [LYZG]
64705
64630
-
Val
TAC
[ENA]
¡û
>W1711263444
LYZH01000004
Gammaproteobacteria
Aeromonas hydrophila [LYZH]
338983
339058
+
Val
TAC
[ENA]
¡û
>W1711304509
MAKI01000039
Gammaproteobacteria
Aeromonas hydrophila [MAKI]
296
221
-
Val
TAC
[ENA]
¡û
>W1711304585
MAKJ01000099
Gammaproteobacteria
Aeromonas hydrophila [MAKJ]
85597
85672
+
Val
TAC
[ENA]
¡û
>W1711667106
MRDF01000006
Gammaproteobacteria
Aeromonas hydrophila [MRDF]
349460
349535
+
Val
TAC
[ENA]
¡û
>W1711717033
MTGJ01000020
Gammaproteobacteria
Aeromonas hydrophila [MTGJ]
164738
164813
+
Val
TAC
[ENA]
¡û
>W1711723799
MTPO01000100
Gammaproteobacteria
Aeromonas hydrophila [MTPO]
566
491
-
Val
TAC
[ENA]
¡û
>W1711926373
NADM01000021
Gammaproteobacteria
Aeromonas hydrophila [NADM]
111837
111762
-
Val
TAC
[ENA]
¡û
>W1711934462
NAJR01000026
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
16638
16563
-
Val
TAC
[ENA]
¡û
>W1711948926
NBOV01000028
Gammaproteobacteria
Aeromonas hydrophila [NBOV]
111661
111586
-
Val
TAC
[ENA]
¡û
>W1711958971
NBWY01000023
Gammaproteobacteria
Aeromonas hydrophila [NBWY]
108096
108021
-
Val
TAC
[ENA]
¡û
>W1712080466
NGZL01000063
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
2509
2584
+
Val
TAC
[ENA]
¡û
>C171048368
CP016380
Gammaproteobacteria
Aeromonas hydrophila AHNIH1 [CP016380]
788153
788228
+
Val
TAC
-
¡û
>C171075139
CP018201
Gammaproteobacteria
Aeromonas hydrophila MX16A [CP018201]
4091034
4090959
-
Val
TAC
-
¡û
>W131044011
AMQA01000028
Gammaproteobacteria
Aeromonas hydrophila SNUFPC-A8 [AMQA]
36969
37044
+
Val
TAC
[ENA]
¡û
>W131124577
APVG01000021
Gammaproteobacteria
Aeromonas diversa 2478-85 [APVG]
38368
38293
-
Val
TAC
[ENA]
¡û
>C000682
CP000462
Gammaproteobacteria
Aeromonas hydrophila subsp. hydrophila ATCC 7966 [CP000462]
4069765
4069690
-
Val
TAC
[Ensembl]
¡û
>WENV013052
AACY020357431
Marine microbial communities from Global Ocean Sampling (GOS)
2218
2293
+
Val
TAC
[ENA]
>WENV013245
AACY020363770
Marine microbial communities from Global Ocean Sampling (GOS)
111748
111673
-
Val
TAC
[ENA]
>C022290
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1643249
1643174
-
Val
TAC
[Ensembl]
¡û
>C022391
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1588324
1588249
-
Val
TAC
[Ensembl]
¡û
>C022494
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1659872
1659797
-
Val
TAC
[Ensembl]
¡û
>C022951
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3261945
3262020
+
Val
TAC
[Ensembl]
¡û
>C022953
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3262168
3262243
+
Val
TAC
[Ensembl]
¡û
>W141171216
AXZL01000066
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
161707
161632
-
Val
TAC
[ENA]
¡û
>W141215829
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
1121670
1121595
-
Val
TAC
[ENA]
¡û
>W141215831
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
1121491
1121416
-
Val
TAC
[ENA]
¡û
>W141215832
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
1121373
1121298
-
Val
TAC
[ENA]
¡û
>W141215834
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
1121192
1121117
-
Val
TAC
[ENA]
¡û
>W141403223
JDWB01000037
Gammaproteobacteria
Aeromonas hydrophila [JDWB]
173020
173095
+
Val
TAC
[ENA]
¡û
>W141403315
JDWC01000085
Gammaproteobacteria
Aeromonas hydrophila [JDWC]
71962
72037
+
Val
TAC
[ENA]
¡û
>W141426376
JEML01000055
Gammaproteobacteria
Aeromonas hydrophila 226 [JEML]
48187
48112
-
Val
TAC
[ENA]
¡û
>WENV170658193
JTFP01067058
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
993
918
-
Val
TAC
[ENA]
¢þ
>WENV170658195
JTFP01067058
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
812
737
-
Val
TAC
[ENA]
¢þ
>WENV170658196
JTFP01067058
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
692
617
-
Val
TAC
[ENA]
¢þ
>WENV170658198
JTFP01067058
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
513
438
-
Val
TAC
[ENA]
¢þ
>W09104047
AALH01000030
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
54695
54620
-
Val
TAC
[ENA]
¡û
>W141463741
JFJO01000168
Gammaproteobacteria
Aeromonas hydrophila AD9 [JFJO]
304
229
-
Val
TAC
[ENA]
¡û
>W09122204
ACFZ01000012
Gammaproteobacteria
Tolumonas auensis DSM 9187 [ACFZ]
70320
70395
+
Val
TAC
[ENA]
¡û
>W09122206
ACFZ01000012
Gammaproteobacteria
Tolumonas auensis DSM 9187 [ACFZ]
70510
70585
+
Val
TAC
[ENA]
¡û
>W09122212
ACFZ01000016
Gammaproteobacteria
Tolumonas auensis DSM 9187 [ACFZ]
21787
21712
-
Val
TAC
[ENA]
¡û
>W09122214
ACFZ01000016
Gammaproteobacteria
Tolumonas auensis DSM 9187 [ACFZ]
21606
21531
-
Val
TAC
[ENA]
¡û
>C181057605
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
218799
218724
-
Val
TAC
-
¡û
>C181062964
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3164294
3164369
+
Val
TAC
-
¡û
>C181129293
CP026217
Gammaproteobacteria
Aeromonas sp. ASNIH4 [CP026217]
3944505
3944430
-
Val
TAC
-
¡û
>C181160079
CP027804
Gammaproteobacteria
Aeromonas hydrophila KN-Mc-1R2 [CP027804]
712614
712689
+
Val
TAC
-
¡û
>C181166959
CP028568
Gammaproteobacteria
Aeromonas hydrophila subsp. hydrophila WCHAH045096 [CP028568]
718090
718165
+
Val
TAC
-
¡û
>C191006720
AP019193
Gammaproteobacteria
Aeromonas hydrophila GSH8-2 [AP019193]
747900
747975
+
Val
TAC
-
¡û
>C191012887
CP016989
Gammaproteobacteria
Aeromonas hydrophila ZYAH72 [CP016989]
752802
752877
+
Val
TAC
-
¡û
>C191013008
CP016990
Gammaproteobacteria
Aeromonas hydrophila ZYAH75 [CP016990]
708826
708901
+
Val
TAC
-
¡û
>W141520089
JGVI01000069
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
113211
113136
-
Val
TAC
[ENA]
¡û
>W141520091
JGVI01000069
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
112984
112909
-
Val
TAC
[ENA]
¡û
>C191057458
CP028418
Gammaproteobacteria
Aeromonas hydrophila WCX23 [CP028418]
3880155
3880080
-
Val
TAC
-
¡û
>C191159974
CP038463
Gammaproteobacteria
Aeromonas hydrophila WCX23 [CP038463]
709704
709779
+
Val
TAC
-
¡û
>C191160099
CP038465
Gammaproteobacteria
Aeromonas hydrophila 23-C-23 [CP038465]
709693
709768
+
Val
TAC
-
¡û
>C191170516
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3317759
3317684
-
Val
TAC
-
¡û
>C191170518
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3317554
3317479
-
Val
TAC
-
¡û
>C191170520
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3317339
3317264
-
Val
TAC
-
¡û
>C191170522
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3317124
3317049
-
Val
TAC
-
¡û
>C191170524
CP039611
Gammaproteobacteria
Aeromonas schubertii LF1708 [CP039611]
3316909
3316834
-
Val
TAC
-
¡û
>C191205273
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3858626
3858551
-
Val
TAC
-
¡û
>W141801738
JPEH01000001
Gammaproteobacteria
Aeromonas hydrophila [JPEH]
4966201
4966276
+
Val
TAC
[ENA]
¡û
>W1910640481
LSZC01000009
Gammaproteobacteria
Aeromonas hydrophila AH1 [LSZC]
15590
15515
-
Val
TAC
[ENA]
¡û
>W1910913769
NHRI01000006
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
205790
205715
-
Val
TAC
[ENA]
¡û
>C09110549
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
2966629
2966554
-
Val
TAC
[Ensembl]
¡û
>C09110551
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
2966439
2966364
-
Val
TAC
[Ensembl]
¡û
>C09110552
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
2966316
2966241
-
Val
TAC
[Ensembl]
¡û
>C09110554
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
2966135
2966060
-
Val
TAC
[Ensembl]
¡û
>W1911621046
PQLM01000007
Gammaproteobacteria
Aeromonas sp. ASNIH6 [PQLM]
623
548
-
Val
TAC
[ENA]
¡û
>W1810073381
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
4479109
4479184
+
Val
TAC
[ENA]
¡û
>W1810073383
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
4479336
4479411
+
Val
TAC
[ENA]
¡û
>W1810259603
PQLL01000007
Gammaproteobacteria
Aeromonas hydrophila AHNIH2 [PQLL]
150611
150686
+
Val
TAC
[ENA]
¡û
>W1810338584
PUTQ01000037
Gammaproteobacteria
Aeromonas hydrophila AFG_SD03_1510_Ahy_093 [PUTQ]
48785
48860
+
Val
TAC
[ENA]
¡û
>C151013550
CP006870
Gammaproteobacteria
Aeromonas hydrophila NJ-35 [CP006870]
700208
700283
+
Val
TAC
[Ensembl]
¡û
>C151013961
CP006883
Gammaproteobacteria
Aeromonas hydrophila J-1 [CP006883]
700021
700096
+
Val
TAC
[Ensembl]
¡û
>C151028188
CP007566
Gammaproteobacteria
Aeromonas hydrophila subsp. hydrophila AL09-71 [CP007566]
4342647
4342572
-
Val
TAC
[Ensembl]
¡û
>C151028788
CP007576
Gammaproteobacteria
Aeromonas hydrophila pc104A [CP007576]
4342610
4342535
-
Val
TAC
[Ensembl]
¡û
>C151074496
CP010947
Gammaproteobacteria
Aeromonas hydrophila AL06-06 [CP010947]
4136543
4136468
-
Val
TAC
[Ensembl]
¡û
>WENV029508
AACY021205175
Marine microbial communities from Global Ocean Sampling (GOS)
81
6
-
Val
TAC
[ENA]
>W1510066493
CDCE01000020
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
458440
458515
+
Val
TAC
[ENA]
¡û
>W1510066495
CDCE01000020
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
458646
458721
+
Val
TAC
[ENA]
¡û
>W1510066497
CDCE01000020
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
458853
458928
+
Val
TAC
[ENA]
¡û
>W1510066512
CDCE01000028
Gammaproteobacteria
Aeromonas diversa CECT 4254 [CDCE]
38420
38345
-
Val
TAC
[ENA]
¡û
>W1510067519
CDDB01000052
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
274521
274596
+
Val
TAC
[ENA]
¡û
>W1510067521
CDDB01000052
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
274726
274801
+
Val
TAC
[ENA]
¡û
>W1510067523
CDDB01000052
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
274941
275016
+
Val
TAC
[ENA]
¡û
>W1510067538
CDDB01000071
Gammaproteobacteria
Aeromonas schubertii CECT 4240 [CDDB]
38541
38466
-
Val
TAC
[ENA]
¡û
>W1511358037
JRWS01000045
Gammaproteobacteria
Aeromonas hydrophila M013 [JRWS]
71956
72031
+
Val
TAC
[ENA]
¡û
>W1511388357
JSWA01000019
Gammaproteobacteria
Aeromonas hydrophila M023 [JSWA]
139072
139147
+
Val
TAC
[ENA]
¡û
>W1511389940
JSXE01000017
Gammaproteobacteria
Aeromonas hydrophila M062 [JSXE]
87724
87799
+
Val
TAC
[ENA]
¡û
>W1511394509
JTBD01000003
Gammaproteobacteria
Aeromonas hydrophila FDAARGOS_78 [JTBD]
399420
399495
+
Val
TAC
[ENA]
¡û
>W1511403546
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2351510
2351435
-
Val
TAC
[ENA]
¡û
>W1511453737
JVFM01000007
Gammaproteobacteria
Aeromonas hydrophila 48_AHYD [JVFM]
104353
104428
+
Val
TAC
[ENA]
¡û
>C161050724
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
3307543
3307468
-
Val
TAC
[Ensembl]
¡û
>C161050728
CP013067
Gammaproteobacteria
Aeromonas schubertii WL1483 [CP013067]
3307113
3307038
-
Val
TAC
[Ensembl]
¡û
>C161052411
CP013178
Gammaproteobacteria
Aeromonas hydrophila JBN2301 [CP013178]
744650
744725
+
Val
TAC
[Ensembl]
¡û
>C161063032
CP013965
Gammaproteobacteria
Aeromonas hydrophila D4 [CP013965]
744030
744105
+
Val
TAC
-
¡û
>C161096941
CP016392
Gammaproteobacteria
Aeromonas hydrophila GYK1 [CP016392]
716710
716785
+
Val
TAC
-
¡û
>W121103361
AKZL01000175
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
141
66
-
Val
TAC
[ENA]
¡û
>C131016454
CP005966
Gammaproteobacteria
Aeromonas hydrophila ML09-119 [CP005966]
4343234
4343159
-
Val
TAC
[Ensembl]
¡û
>WENV073792
AACY023937863
Marine microbial communities from Global Ocean Sampling (GOS)
857
932
+
Val
TAC
[ENA]
>W1610617853
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
12362
12287
-
Val
TAC
[ENA]
¡û
>W1610617855
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
12135
12060
-
Val
TAC
[ENA]
¡û
>W1610774236
LNUR01000011
Gammaproteobacteria
Aeromonas hydrophila [LNUR]
304166
304241
+
Val
TAC
[ENA]
¡û
>W1610842268
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
39441
39366
-
Val
TAC
[ENA]
¡û
>W1610842270
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
39236
39161
-
Val
TAC
[ENA]
¡û
>W1610842272
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
39021
38946
-
Val
TAC
[ENA]
¡û
>W1610842274
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
38806
38731
-
Val
TAC
[ENA]
¡û
>W1610842276
LPUO01000023
Gammaproteobacteria
Aeromonas schubertii [LPUO]
38591
38516
-
Val
TAC
[ENA]
¡û
>W1610892097
LRRV01000002
Gammaproteobacteria
Aeromonas hydrophila [LRRV]
338983
339058
+
Val
TAC
[ENA]
¡û
>W1610892219
LRRW01000003
Gammaproteobacteria
Aeromonas hydrophila [LRRW]
113510
113435
-
Val
TAC
[ENA]
¡û
>W1610892292
LRRX01000004
Gammaproteobacteria
Aeromonas hydrophila [LRRX]
338984
339059
+
Val
TAC
[ENA]
¡û
>W1610892406
LRRY01000006
Gammaproteobacteria
Aeromonas hydrophila [LRRY]
365
290
-
Val
TAC
[ENA]
¡û
>W1710595836
FTME01000005
Gammaproteobacteria
Aeromonas hydrophila [FTME]
112416
112341
-
Val
TAC
[ENA]
¡û
>W1710596092
FTMJ01000003
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
33138
33063
-
Val
TAC
[ENA]
¡û
>W1710596094
FTMJ01000003
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
32929
32854
-
Val
TAC
[ENA]
¡û
>W1710596096
FTMJ01000003
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
32718
32643
-
Val
TAC
[ENA]
¡û
>W1710596098
FTMJ01000003
Gammaproteobacteria
Aeromonas sp. RU39B [FTMJ]
32522
32447
-
Val
TAC
[ENA]
¡û
>W1710597550
FTNG01000005
Gammaproteobacteria
Aeromonas hydrophila RU34C [FTNG]
112416
112341
-
Val
TAC
[ENA]
¡û
>W1710692512
JZWJ01000174
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
18052
17977
-
Val
TAC
[ENA]
¡û
>W1710706641
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
5034433
5034508
+
Val
TAC
[ENA]
¡û
>W1710744028
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
12362
12287
-
Val
TAC
[ENA]
¡û
>W1710744030
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
12135
12060
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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