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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454129 (63 seq.)
>W1711135300
LUYT01000083
Bacteroidota
Bacteroidales bacterium Bact_02 [LUYT]
573
498
-
Lys
TTT
[ENA]
¡û
>W1711270595
LZEK01000003
Bacteroidota
Macellibacteroides sp. HH-ZS [LZEK]
27694
27619
-
Lys
TTT
[ENA]
¡û
>W1711270628
LZEK01000016
Bacteroidota
Macellibacteroides sp. HH-ZS [LZEK]
19123
19048
-
Lys
TTT
[ENA]
¡û
>W1711388642
MEHX01000031
Bacteroidota
Tannerella forsythia [MEHX]
27588
27515
-
Lys
TTT
[ENA]
¡û
>W1711392355
MENM01000095
Bacteroidota
Bacteroidetes bacterium GWC1_47_7 [MENM]
3782
3857
+
Lys
TTT
[ENA]
¡û
>W1711392517
MENQ01000025
Bacteroidota
Bacteroidetes bacterium GWC2_46_850 [MENQ]
139668
139593
-
Lys
TTT
[ENA]
¡û
>W1711392628
MENT01000012
Bacteroidota
Bacteroidetes bacterium GWD2_45_23 [MENT]
139664
139589
-
Lys
TTT
[ENA]
¡û
>W1711502913
MKTD01000039
Bacteroidota
Bacteroidia bacterium 43-41 [MKTD]
1027
954
-
Lys
TTT
[ENA]
¡û
>W1711502933
MKTE01000004
Bacteroidota
Bacteroidia bacterium 44-10 [MKTE]
26875
26800
-
Lys
TTT
[ENA]
¡û
>W1711502982
MKTE01000084
Bacteroidota
Bacteroidia bacterium 44-10 [MKTE]
19716
19789
+
Lys
TTT
[ENA]
¡û
>W1711629411
MPOX01000021
Bacteroidota
Proteiniphilum sp. EBM-41 [MPOX]
177
104
-
Lys
TTT
[ENA]
¡û
>C171129212
LT605205
Bacteroidota
Proteiniphilum saccharofermentans M3/6 [LT605205]
2391191
2391116
-
Lys
TTT
-
¡û
>W131177694
ARKZ01000024
Bacteroidota
Proteiniphilum acetatigenes DSM 18083 [ARKZ]
78709
78634
-
Lys
TTT
[ENA]
¡û
>W141008349
AGZO01000007
Bacteroidota
Parabacteroides goldsteinii CL02T12C30 [AGZO]
29021
29094
+
Lys
TTT
[ENA]
¡û
>WENV180297034
OBJA01007973
[OBJA] soil metagenome; sediment, water from around vicinity
1801
1728
-
Lys
TTT
[ENA]
¢þ
>WENV180731522
ODGW01001488
[ODGW] human metagenome; G_DNA_Supragingival plaque
4014
4087
+
Lys
TTT
[ENA]
¢þ
>WENV180734631
ODGZ01015849
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1807
1734
-
Lys
TTT
[ENA]
¢þ
>WENV180751429
ODHS01053128
[ODHS] human metagenome; G_DNA_Supragingival plaque
395
468
+
Lys
TTT
[ENA]
¢þ
>WENV180808635
ODJK01000381
[ODJK] human metagenome; G_DNA_Subgingival plaque
2843
2916
+
Lys
TTT
[ENA]
¢þ
>WENV180844203
ODKN01049346
[ODKN] human metagenome; G_DNA_Supragingival plaque
534
461
-
Lys
TTT
[ENA]
¢þ
>WENV180951741
ODUH01048986
[ODUH] human metagenome; G_DNA_Subgingival plaque
634
561
-
Lys
TTT
[ENA]
¢þ
>WENV180981232
ODVE01011346
[ODVE] human metagenome; G_DNA_Supragingival plaque
422
349
-
Lys
TTT
[ENA]
¢þ
>WENV181090252
OEBC01000042
[OEBC] human metagenome; G_DNA_Supragingival plaque
34927
34854
-
Lys
TTT
[ENA]
¢þ
>WENV181231415
OFEK01025005
[OFEK] activated sludge metagenome; Anaerobic digester
1070
997
-
Lys
TTT
[ENA]
¢þ
>WENV181579885
OGJZ01001874
[OGJZ] metagenome; Human gut stool
16770
16695
-
Lys
TTT
[ENA]
¢þ
>WENV181841440
OGVR01032123
[OGVR] freshwater metagenome; freshwater
390
465
+
Lys
TTT
[ENA]
¢þ
>WENV181861452
OGWR01037412
[OGWR] human gut metagenome; faeces
295
370
+
Lys
TTT
[ENA]
¢þ
>WENV182534564
OIXG01001119
[OIXG] human gut metagenome; faeces
4952
4879
-
Lys
TTT
[ENA]
¢þ
>WENV182914046
OKTO01020045
[OKTO] human gut metagenome; feces
19
92
+
Lys
TTT
[ENA]
¢þ
>WENV182998648
OLBU01015523
[OLBU] human gut metagenome; human gut
137
64
-
Lys
TTT
[ENA]
¢þ
>WENV170003831
AGTN01465688
[AGTN] bioreactor metagenome; poplar biomass
7513
7586
+
Lys
TTT
[ENA]
¢þ
>WENV170655391
JTFN01027983
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
295
370
+
Lys
TTT
[ENA]
¢þ
>WENV170655654
JTFN01055165
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
84
157
+
Lys
TTT
[ENA]
¢þ
>WENV170656681
JTFO01033139
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1441
1514
+
Lys
TTT
[ENA]
¢þ
>WENV170656952
JTFO01064211
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1014
1089
+
Lys
TTT
[ENA]
¢þ
>WENV170657344
JTFO01130290
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
442
517
+
Lys
TTT
[ENA]
¢þ
>WENV170657632
JTFP01005710
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
284
357
+
Lys
TTT
[ENA]
¢þ
>WENV170658323
JTFP01087289
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
117
190
+
Lys
TTT
[ENA]
¢þ
>WENV170658522
JTFP01131953
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
217
144
-
Lys
TTT
[ENA]
¢þ
>WENV170670169
LAHS01079607
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
76
1
-
Lys
TTT
[ENA]
¢þ
>WENV170708030
LNAP01044891
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1283
1356
+
Lys
TTT
[ENA]
¢þ
>WENV170967281
MTKW01000667
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
34167
34242
+
Lys
TTT
[ENA]
¢þ
>C181004302
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
2216637
2216710
+
Lys
TTT
-
¡û
>W1910217543
FMML01000031
Bacteroidota
Tannerella forsythia UB22 [FMML]
117362
117435
+
Lys
TTT
[ENA]
¡û
>W1910217583
FMMM01000033
Bacteroidota
Tannerella forsythia UB20 [FMMM]
117408
117481
+
Lys
TTT
[ENA]
¡û
>W1910217621
FMMN01000033
Bacteroidota
Tannerella forsythia UB4 [FMMN]
116263
116336
+
Lys
TTT
[ENA]
¡û
>W1910371930
FUFV01000010
Bacteroidota
Parabacteroides sp. Marseille-P3160 [FUFV]
40597
40524
-
Lys
TTT
[ENA]
¡û
>W1910503457
FYCK01000016
Bacteroidota
Parabacteroides bouchesdurhonensis Marseille-P3763 [FYCK]
260766
260839
+
Lys
TTT
[ENA]
¡û
>W1911247283
NSLJ01000009
Bacteroidota
Tannerella forsythia WW11663 [NSLJ]
84241
84314
+
Lys
TTT
[ENA]
¡û
>W1911247315
NSLK01000001
Bacteroidota
Tannerella forsythia WW10960 [NSLK]
193892
193819
-
Lys
TTT
[ENA]
¡û
>W1810192632
PKMK01000039
Bacteroidota
Dysgonamonadaceae bacterium XHS2771 [PKMK]
3901
3974
+
Lys
TTT
[ENA]
¡û
>C151102951
LN515532
Bacteroidota
Fermentimonas caenicola [LN515532]
1018996
1019069
+
Lys
TTT
[Ensembl]
¡û
>W1510562684
CTEJ01000001
Bacteroidota
Lascolabacillus massiliensis SIT8 [CTEJ]
1155812
1155739
-
Lys
TTT
[ENA]
¡û
>W1511430503
JUET01000030
Bacteroidota
Tannerella forsythia ATCC 43037 [JUET]
14907
14834
-
Lys
TTT
[ENA]
¡û
>C121007772
CP003191
Bacteroidota
Tannerella forsythia 92A2 [CP003191]
1176434
1176507
+
Lys
TTT
[Ensembl]
¡û
>C161000150
AP013044
Bacteroidota
Tannerella forsythia 3313 [AP013044]
1153824
1153897
+
Lys
TTT
-
¡û
>C161000218
AP013045
Bacteroidota
Tannerella forsythia KS16 [AP013045]
1226348
1226275
-
Lys
TTT
[Ensembl]
¡û
>W1610946420
LUYT01000083
Bacteroidota
Bacteroidales bacterium Bact_02 [LUYT]
573
498
-
Lys
TTT
[ENA]
¡û
>W1710533133
FNQW01000066
Bacteroidota
Porphyromonadaceae bacterium KH3R12 [FNQW]
466
391
-
Lys
TTT
[ENA]
¡û
>W1710567522
FOSU01000021
Bacteroidota
Porphyromonadaceae bacterium KH3CP3RA [FOSU]
21374
21449
+
Lys
TTT
[ENA]
¡û
>W1710576039
FOZR01000053
Bacteroidota
Porphyromonadaceae bacterium NLAE-zl-C104 [FOZR]
10004
9929
-
Lys
TTT
[ENA]
¡û
>W1710602942
FUYQ01000018
Bacteroidota
Parabacteroides chartae [FUYQ]
78136
78211
+
Lys
TTT
[ENA]
¡û
>W1710602952
FUYQ01000027
Bacteroidota
Parabacteroides chartae [FUYQ]
19585
19510
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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