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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454245 (65 seq.)
>W1710990948
LPXH01000033
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
65446
65371
-
Lys
CTT
[ENA]
¡û
>W1710990949
LPXH01000033
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
65321
65246
-
Lys
CTT
[ENA]
¡û
>W1710990951
LPXH01000034
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
98
23
-
Lys
CTT
[ENA]
¡û
>W1711504307
MKUK01000052
Betaproteobacteria
Alicycliphilus sp. 69-12 [MKUK]
27595
27520
-
Lys
CTT
[ENA]
¡û
>W1711628355
MPOE01000005
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
65899
65824
-
Lys
CTT
[ENA]
¡û
>W1711628356
MPOE01000005
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
65801
65726
-
Lys
CTT
[ENA]
¡û
>W1711628357
MPOE01000005
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
65676
65601
-
Lys
CTT
[ENA]
¡û
>W1711628479
MPOF01000035
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
65416
65341
-
Lys
CTT
[ENA]
¡û
>W1711628480
MPOF01000035
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
65318
65243
-
Lys
CTT
[ENA]
¡û
>W1712102932
NIOE01000020
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
23412
23487
+
Lys
CTT
[ENA]
¡û
>W1712102933
NIOE01000020
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
23651
23726
+
Lys
CTT
[ENA]
¡û
>W1712102964
NIOF01000003
Betaproteobacteria
Roseateles aquatilis [NIOF]
268349
268424
+
Lys
CTT
[ENA]
¡û
>W1712102965
NIOF01000003
Betaproteobacteria
Roseateles aquatilis [NIOF]
268613
268688
+
Lys
CTT
[ENA]
¡û
>W1712103018
NIOG01000002
Betaproteobacteria
Roseateles terrae [NIOG]
170184
170109
-
Lys
CTT
[ENA]
¡û
>C171104826
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
546846
546921
+
Lys
CTT
-
¡û
>C171104827
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
546944
547019
+
Lys
CTT
-
¡û
>C171104828
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
547069
547144
+
Lys
CTT
-
¡û
>W131239401
BANP01000078
Betaproteobacteria
Acidovorax sp. MR-S7 [BANP]
1896
1821
-
Lys
CTT
[ENA]
¡û
>WENV180019601
FTCD01000526
[FTCD] metagenome; soil
146496
146421
-
Lys
CTT
[ENA]
¢þ
>WENV180258788
OBEQ011043307
[OBEQ] groundwater metagenome; groundwater
243
168
-
Lys
CTT
[ENA]
¢þ
>WENV180364133
OBNZ01103250
[OBNZ] marine metagenome; ENVO:00002010
324
249
-
Lys
CTT
[ENA]
¢þ
>WENV181312417
OFJB01110245
[OFJB] sludge metagenome; sludge
432
357
-
Lys
CTT
[ENA]
¢þ
>WENV181402651
OFTY01013754
[OFTY] sludge metagenome; sludge
358
433
+
Lys
CTT
[ENA]
¢þ
>WENV170011637
APMI01078808
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
5122
5047
-
Lys
CTT
[ENA]
¢þ
>WENV170019828
BBPE01000816
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
6689
6764
+
Lys
CTT
[ENA]
¢þ
>WENV170551508
CXWJ01010259
[CXWJ] wastewater metagenome; activated sludge
76
1
-
Lys
CTT
[ENA]
¢þ
>WENV170559887
CXWL01167549
[CXWL] groundwater metagenome; biofilm material
984
909
-
Lys
CTT
[ENA]
¢þ
>W1910972126
NKDB02000005
Betaproteobacteria
Alicycliphilus denitrificans BQ1 [NKDB]
12192
12117
-
Lys
CTT
[ENA]
¡û
>W1810081342
PEOG01000012
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
28245
28320
+
Lys
CTT
[ENA]
¡û
>W1810081343
PEOG01000012
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
28483
28558
+
Lys
CTT
[ENA]
¡û
>W1810088977
PGEJ01000008
Betaproteobacteria
Alicycliphilus denitrificans CD02 [PGEJ]
115141
115216
+
Lys
CTT
[ENA]
¡û
>W1810884610
QUMT01000001
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
1126463
1126538
+
Lys
CTT
[ENA]
¡û
>W1810884611
QUMT01000001
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
1126593
1126668
+
Lys
CTT
[ENA]
¡û
>W1510016620
BBSJ01000059
Betaproteobacteria
Alicycliphilus sp. B1 [BBSJ]
54462
54387
-
Lys
CTT
[ENA]
¡û
>W10119606
ADWA01000013
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
53637
53712
+
Lys
CTT
[ENA]
¡û
>C11100612
CP002449
Betaproteobacteria
Alicycliphilus denitrificans BC [CP002449]
1353641
1353566
-
Lys
CTT
[Ensembl]
¡û
>C11100641
CP002657
Betaproteobacteria
Alicycliphilus denitrificans K601 [CP002657]
3792373
3792448
+
Lys
CTT
[Ensembl]
¡û
>W1510742425
CYIG01000010
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
63267
63342
+
Lys
CTT
[ENA]
¡û
>W11125872
ADWA01000013
Betaproteobacteria
Alicycliphilus denitrificans BC [ADWA]
53637
53712
+
Lys
CTT
[ENA]
¡û
>C161036419
CP011514
Betaproteobacteria
Mitsuaria sp. 7 [CP011514]
142426
142501
+
Lys
CTT
-
¡û
>C161036420
CP011514
Betaproteobacteria
Mitsuaria sp. 7 [CP011514]
142676
142751
+
Lys
CTT
-
¡û
>C161060305
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
4041525
4041450
-
Lys
CTT
[Ensembl]
¡û
>C161060306
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
4041395
4041320
-
Lys
CTT
[Ensembl]
¡û
>W1610062755
BCNT01000003
Betaproteobacteria
Comamonas terrae [BCNT]
304276
304351
+
Lys
CTT
[ENA]
¡û
>W1610062756
BCNT01000003
Betaproteobacteria
Comamonas terrae [BCNT]
304403
304478
+
Lys
CTT
[ENA]
¡û
>W1610062757
BCNT01000003
Betaproteobacteria
Comamonas terrae [BCNT]
304531
304606
+
Lys
CTT
[ENA]
¡û
>W1610076265
BCYP01000033
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199759
199684
-
Lys
CTT
[ENA]
¡û
>W1610076266
BCYP01000033
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199570
199495
-
Lys
CTT
[ENA]
¡û
>W1610610020
LFYP01000140
Betaproteobacteria
Comamonas kerstersii [LFYP]
111611
111686
+
Lys
CTT
[ENA]
¡û
>W1610610021
LFYP01000140
Betaproteobacteria
Comamonas kerstersii [LFYP]
111709
111784
+
Lys
CTT
[ENA]
¡û
>W1610610022
LFYP01000140
Betaproteobacteria
Comamonas kerstersii [LFYP]
111834
111909
+
Lys
CTT
[ENA]
¡û
>W1610845620
LPXH01000033
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
65446
65371
-
Lys
CTT
[ENA]
¡û
>W1610845621
LPXH01000033
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
65321
65246
-
Lys
CTT
[ENA]
¡û
>W1610845623
LPXH01000034
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
98
23
-
Lys
CTT
[ENA]
¡û
>W1710060231
BCNT01000003
Betaproteobacteria
Comamonas terrae [BCNT]
304276
304351
+
Lys
CTT
[ENA]
¡û
>W1710060232
BCNT01000003
Betaproteobacteria
Comamonas terrae [BCNT]
304403
304478
+
Lys
CTT
[ENA]
¡û
>W1710060233
BCNT01000003
Betaproteobacteria
Comamonas terrae [BCNT]
304531
304606
+
Lys
CTT
[ENA]
¡û
>W1710074080
BCYP01000033
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199759
199684
-
Lys
CTT
[ENA]
¡û
>W1710074081
BCYP01000033
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199570
199495
-
Lys
CTT
[ENA]
¡û
>W1710575469
FOZE01000004
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
40084
40009
-
Lys
CTT
[ENA]
¡û
>W1710575470
FOZE01000004
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
39847
39772
-
Lys
CTT
[ENA]
¡û
>W1710578867
FPBX01000011
Betaproteobacteria
Paenacidovorax caeni [FPBX]
83059
83134
+
Lys
CTT
[ENA]
¡û
>W1710731365
LFYP01000140
Betaproteobacteria
Comamonas kerstersii [LFYP]
111611
111686
+
Lys
CTT
[ENA]
¡û
>W1710731366
LFYP01000140
Betaproteobacteria
Comamonas kerstersii [LFYP]
111709
111784
+
Lys
CTT
[ENA]
¡û
>W1710731367
LFYP01000140
Betaproteobacteria
Comamonas kerstersii [LFYP]
111834
111909
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK