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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454305 (36 seq.)
>WENV010654
AACY020288454
Marine microbial communities from Global Ocean Sampling (GOS)
2412
2487
+
Lys
TTT
[ENA]
>WENV001108
AACY020033925
Marine microbial communities from Global Ocean Sampling (GOS)
389
464
+
Lys
TTT
[ENA]
>WENV182570872
OJFF01004481
[OJFF] seawater metagenome; Sea water
974
1047
+
Lys
TTT
[ENA]
¢þ
>WENV170024595
BCQL01081504
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
486
561
+
Lys
TTT
[ENA]
¢þ
>WENV170024596
BCQL01081504
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
635
708
+
Lys
TTT
[ENA]
¢þ
>WENV170025443
BCQL01339251
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2
77
+
Lys
TTT
[ENA]
¢þ
>WENV170532599
CEWO01053219
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4795
4722
-
Lys
TTT
[ENA]
¢þ
>WENV170568915
FLMP01097013
[FLMP] seawater metagenome; seawater
761
686
-
Lys
TTT
[ENA]
¢þ
>WENV170808598
MDSW01117724
[MDSW] marine metagenome; seawater
93
20
-
Lys
TTT
[ENA]
¢þ
>WENV170824221
MDSY01072123
[MDSY] marine metagenome; seawater
7678
7751
+
Lys
TTT
[ENA]
¢þ
>WENV170871071
MDTB01201131
[MDTB] marine metagenome; seawater
77
4
-
Lys
TTT
[ENA]
¢þ
>WENV170873387
MDTB01231548
[MDTB] marine metagenome; seawater
79
6
-
Lys
TTT
[ENA]
¢þ
>WENV170940021
MDTG01335828
[MDTG] marine metagenome; seawater
79
6
-
Lys
TTT
[ENA]
¢þ
>WENV170950823
MEHZ011520292
[MEHZ] marine metagenome; marine surface water
1297
1222
-
Lys
TTT
[ENA]
¢þ
>WENV170953444
MEHZ011645936
[MEHZ] marine metagenome; marine surface water
1212
1137
-
Lys
TTT
[ENA]
¢þ
>W09110727
ABVV01000006
Bacteroidota
Flavobacteria bacterium MS024-2A [ABVV]
737
662
-
Lys
TTT
[ENA]
¡û
>WENV002301
AACY020064485
Marine microbial communities from Global Ocean Sampling (GOS)
419
494
+
Lys
TTT
[ENA]
>W1511590431
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2010
1937
-
Lys
TTT
[ENA]
¡û
>W1511590432
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
1806
1733
-
Lys
TTT
[ENA]
¡û
>W1511590433
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
1703
1628
-
Lys
TTT
[ENA]
¡û
>WENV046693
AACY022616479
Marine microbial communities from Global Ocean Sampling (GOS)
574
499
-
Lys
TTT
[ENA]
>C161046247
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
47860
47935
+
Lys
TTT
-
¡û
>C161046248
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48009
48082
+
Lys
TTT
-
¡û
>C161046249
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48111
48184
+
Lys
TTT
-
¡û
>C161046250
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48213
48286
+
Lys
TTT
-
¡û
>C161046251
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48317
48390
+
Lys
TTT
-
¡û
>C161046252
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48419
48492
+
Lys
TTT
-
¡û
>C161046253
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48521
48594
+
Lys
TTT
-
¡û
>C161046254
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48623
48696
+
Lys
TTT
-
¡û
>C161046255
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48725
48798
+
Lys
TTT
-
¡û
>C161046256
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48827
48900
+
Lys
TTT
-
¡û
>C161046257
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
48930
49005
+
Lys
TTT
-
¡û
>C161046258
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
49032
49107
+
Lys
TTT
-
¡û
>WENV000669
AACY020020847
Marine microbial communities from Global Ocean Sampling (GOS)
2735
2810
+
Lys
TTT
[ENA]
>WENV000756
AACY020024502
Marine microbial communities from Global Ocean Sampling (GOS)
21
96
+
Lys
TTT
[ENA]
>WENV009560
AACY020257126
Marine microbial communities from Global Ocean Sampling (GOS)
563
488
-
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK